Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90738g00015 ATGACAAAGGGCAAGGGAACGGTGAGGATCCCGAAGGAAGCCTTGAAGGCTGTCGATGACCGAAAGGTAGGAAAGAGAAAAGCTGCTACCAAGCCTGACAGGAGTAGCGCACGGTCAAAGAAGGCAAAGAAAGATCCCAACAAACCCAAAAGGCCGCCGAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGAAAGACGTTCAAGGCTGAAAATCCTCATGTGAAGGCTGTATCAGCTGTTGGAAAAGCCGGGGGAGAAAAATGGAAGTCCATGAGTCCAGCTGAAAAAGCTACATATGAAGCCAAGGCTCAAAACAGGAAGGCTGATTATGAAAAACAAATAAAAGCTTATAATAAAAAGCAGGCAAGCTCAGCTGATGATGGAGATGAGGAATCAGACAAGTCCAAATCTGAAGTGCATGATGACGAGGAAGAAGGCAGTGCAGAGGAGGATCATCAAGAGGAGGATGAGGATGACGACGAGGGGGAAGATGAGAATGACGACGACGATGACGAGTGA 519 0.474 MTKGKGTVRIPKEALKAVDDRKVGKRKAATKPDRSSARSKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPHVKAVSAVGKAGGEKWKSMSPAEKATYEAKAQNRKADYEKQIKAYNKKQASSADDGDEESDKSKSEVHDDEEEGSAEEDHQEEDEDDDEGEDENDDDDDE 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90738g00015 172 SMART hmgende2 48 119 IPR009071 -
Stsc90738g00015 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 153 IPR031061 -
Stsc90738g00015 172 CDD HMG-box_AtHMGB1-like 50 110 - -
Stsc90738g00015 172 SUPERFAMILY HMG-box 35 119 IPR036910 -
Stsc90738g00015 172 MobiDBLite consensus disorder prediction 143 172 - -
Stsc90738g00015 172 Coils Coil 100 120 - -
Stsc90738g00015 172 MobiDBLite consensus disorder prediction 9 42 - -
Stsc90738g00015 172 MobiDBLite consensus disorder prediction 100 142 - -
Stsc90738g00015 172 MobiDBLite consensus disorder prediction 1 53 - -
Stsc90738g00015 172 Gene3D High mobility group box domain 32 135 IPR036910 -
Stsc90738g00015 172 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 49 118 IPR009071 -
Stsc90738g00015 172 Pfam HMG (high mobility group) box 49 118 IPR009071 -
Stsc90738g00015 172 MobiDBLite consensus disorder prediction 69 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90738g00015 Stsc-Chr90738 100489 103555 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc90738g00015 HMG_box 7.5e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90738g00015 K25507 - gmx:100499704 176.022