Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90738g00012 ATGGGGTTTAGCTTCAAGAGAAGGAAGAAGGAACAACAAGATGGAGGTGGAGGAGATAATAATAATAATAATAATAATAATAATAATATCACCAAGTCTTTCAAGGATTCACTTAAAGCTCTTCAAGCTGACATCCAATTTGCCAATACACTAGCTTCAGAGTATCCATGTGAGCGCGATGGTTCTCGGTTCCAAATGAGGTTATCATACAGCCCAGCTGCTCAGTTTTTCCTTTTTCTGGTTCAATGGACCGATTGTCACCTCGCCGGAGCATTGGGATTGCTTAGAATCCTTATTTACAAGGCATGTGCTGATGGTAAGACAACCATTTCCATTTATGAACGAAAAGCCAGCCTGAAGGAGTTCTACCGTGTGCTGTTTCCCTCTTTATTGCAACTCAACGGAGGAATCAGTGATGTCGAAGACAGGAAACAGAAACATTTATGTGCTACAAAGTACAAGACAAGAGACATGACAAGCAAAGGAAAGGTCTCTGAAGTCGAGATAGAGAGAGAAGAAGAATGTGGCATTTGCCTGGAGATGAACGGCACGGTTGTGTTGCCGAATTGCAATCATTCGATGTGTATGAAATGCTACGAAGATTGGTGGGCAAGATCTCAATCTTGCCCTTTCTGTAGAGAAAGCCTTGAAGGAGTAAAGTCTGGTGACCTTTGGATCTACATAAACAAGAATGAAATTGATGATTTGGATTCAATCAACAAAGAGAATTTGAAGAGATTATTTATGTACATAGAAAGATTGCCCATCGTTGTGCCAGACCACCCTATATCCGTTTCATACCATCAACGCTGGTGA 816 0.4105 MGFSFKRRKKEQQDGGGGDNNNNNNNNNNITKSFKDSLKALQADIQFANTLASEYPCERDGSRFQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKACADGKTTISIYERKASLKEFYRVLFPSLLQLNGGISDVEDRKQKHLCATKYKTRDMTSKGKVSEVEIEREEECGICLEMNGTVVLPNCNHSMCMKCYEDWWARSQSCPFCRESLEGVKSGDLWIYINKNEIDDLDSINKENLKRLFMYIERLPIVVPDHPISVSYHQRW 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90738g00012 271 PANTHER RING FINGER PROTEIN 41, 151 32 267 - -
Stsc90738g00012 271 SMART ring_2 175 212 IPR001841 -
Stsc90738g00012 271 ProSitePatterns Zinc finger RING-type signature. 190 199 IPR017907 -
Stsc90738g00012 271 MobiDBLite consensus disorder prediction 1 15 - -
Stsc90738g00012 271 SUPERFAMILY RING/U-box 164 216 - -
Stsc90738g00012 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 222 IPR013083 -
Stsc90738g00012 271 Pfam Zinc finger, C3HC4 type (RING finger) 172 218 - -
Stsc90738g00012 271 MobiDBLite consensus disorder prediction 1 29 - -
Stsc90738g00012 271 FunFam RING/U-box superfamily protein 156 222 - -
Stsc90738g00012 271 ProSiteProfiles Zinc finger RING-type profile. 175 213 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90738g00012 Stsc-Chr90738 91429 94856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90738g00012 123 224 C3H Transcription Factor Family AT5G01960 31.776 2.99e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90738g00012 K25840 - gmx:100814293 370.933