Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90738g00001 ATGGGGTCTCACCAACAAGAGCCATGGCTTCTGGAGAATGGGAACTTGAAGGTGTTGACCAAGGAGATGCGGCACGGCCACGGCCGGAGCCGTACTGCCCACAACATGTCGTCCTCTTCCCTCCGGAAGAAATCCGACCGGACCCTGGTGTCGAAGGTCCGGTGCGAATTGCTAAGGAACGTGTTGGTTAACCTCCAAGAGGTTATTCTGGGGACAAAGTTGTCCATCTTGTTCCCAGCAATTCCCATTGCCATCATTGCCCATTTCTATGGGCTTGGAAGACCATGGGTATTCGCATTGAGCTTACTTGGGCTTACACCACTTGCTGAACGTGTCAGCTTCCTAACAGAACAAGTCGCATTTTACACTGGTCCTACAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATATTACTGAGCTGGTAATAGCAATATTTGCACTCAGTTCTAACAAAGTTGATGTGGTCAAGTATTCTCTATTGGGCTCTATCCTCTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTATTGTGCGGTGGCATTGCAAACCTTGGAAAGGAACAAAAATATGATAGAAGACAAGCTGATGTGAACTCACTAATGCTTCTGCTGGCATTGTTGTGCCACCTGCTTCCAATGCTGTTCAGATACAGCGGGGGCTCAGACGCTGTCGCAGCCGCAAACTCGTCGCTGTACTTGTCGAGGGCCGCCAGCATTACCATGTTGATTGCATATTTTGCTTACCTCATCTTTCAGTTGTGGACACACAGGCAATTGTTTGAAGCTGAAGATGAGGATGGAGAGGGTGAGAATAATGGTTCAGATGATGAAGCAGCTGTGATTGGGATCTGGAGTGGTGTTGCATGGCTGGCTGGGATGACTGTTTTCATTGCTTTGTTATCTGAATATGTTGTGGACACAATTGAGGAAGCATCGGATACATGGGGTCTTTCTGTAAGCTTTCTCAGCATAATTTTGCTACCAATTGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGATATCTCACTGGGTGTTGCATTAGGTTCTTCCACTCAAATTGGCATGTTTGCGGTTCCTTTATGTGTGCTGGTTGCTTGGATAATGGGTGTTAAAATGGATCTAAACTTCAACCTGCTAGAAACGGGTTCTCTTGCTTTGGCAATAATAGTCACATCCTTTTCTTTACAGGATGGTACATCTCACTACATGAAAGGTCTTATTCTTCTCTTGTGCTACGTTGTGATTGGTGCTTGCTTCTTTGTGCAAAGAACACCCTTAAACCAAGGGAATGATGTCACTAACATCACATTCAAATCAGCAAGTGATGCAGTTTTAAGTGCTTAA 1371 0.4544 MGSHQQEPWLLENGNLKVLTKEMRHGHGRSRTAHNMSSSSLRKKSDRTLVSKVRCELLRNVLVNLQEVILGTKLSILFPAIPIAIIAHFYGLGRPWVFALSLLGLTPLAERVSFLTEQVAFYTGPTVGGLLNATCGNITELVIAIFALSSNKVDVVKYSLLGSILSNLLLVLGTSLLCGGIANLGKEQKYDRRQADVNSLMLLLALLCHLLPMLFRYSGGSDAVAAANSSLYLSRAASITMLIAYFAYLIFQLWTHRQLFEAEDEDGEGENNGSDDEAAVIGIWSGVAWLAGMTVFIALLSEYVVDTIEEASDTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSSTQIGMFAVPLCVLVAWIMGVKMDLNFNLLETGSLALAIIVTSFSLQDGTSHYMKGLILLLCYVVIGACFFVQRTPLNQGNDVTNITFKSASDAVLSA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90738g00001 456 FunFam Vacuolar cation/proton exchanger 274 430 - -
Stsc90738g00001 456 NCBIfam calcium/proton exchanger 79 429 IPR004798 GO:0006816|GO:0015369
Stsc90738g00001 456 Gene3D - 125 265 IPR044880 -
Stsc90738g00001 456 Gene3D - 275 429 IPR044880 -
Stsc90738g00001 456 NCBIfam calcium/proton exchanger 60 429 - -
Stsc90738g00001 456 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 23 433 IPR004713 GO:0006812|GO:0008324|GO:0016020
Stsc90738g00001 456 FunFam Vacuolar cation/proton exchanger 125 270 - -
Stsc90738g00001 456 Pfam Sodium/calcium exchanger protein 96 254 IPR004837 GO:0016020|GO:0055085
Stsc90738g00001 456 Pfam Sodium/calcium exchanger protein 287 424 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90738g00001 Stsc-Chr90738 2850 6233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90738g00001 7 437 Antiporters AT2G38170 68.037 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90738g00001 K07300 - gmx:100816231 669.077