LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90735g00013	ATGGAAGAAAAAGAGAATTTTGGTGATGTTAGTGCCGCAGAGAGCTTCCACGTGGCACCCAGAGTTGAGACCATAGATTTTTCCGGCGCCTCCACGCCGACGCCGGCGCCAGGGACGGGGACGGGGACCGATGGGAAGAAGAAGAGAGGAAGGCCTAGGAAGTACGGACCGGATGGGAAGCCAACGGCGGCAGCAGCGGGGGCGCTGTCTCCGATGCCGATATCGGCTTCAATTCCGTTGACCGGAGAGTTCTCAGGCTGGAAGAGGGGGAAAGGAAGGTCTGTTGAGTCCATCAAGAAGTCATCATTTAAGTATGACTTTGAAAGTCCAGGACCAGGACCAGGTGAGGGAATCCAATACTCAGTTGGTGCCAATTTTACACCACATGTACTTACTGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCTTTTTCTCAACAAGGATCACGAGGTATATGTGTTCTCTCTGCAAATGGCACGATTTCAAATGTTACACTTCGTCAACCCACGTCTTCTGGGGGTACTTTAACATATGAGGGGCGATTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCTACTGAGAATGGAGTTACGAAAAGCAGATCCGGTGGGATGAGCGTCTCTTTAGCTGGTCCAGATGGTCGAGTAATGGGAGGAGGACTCGCTGGTTTGCTGATAGCTGCCGGTCCTGTTCAGGTTGTTGTGGGTAGTTTTCTTCCCGGTCACCAGCTCGAGCATAAATCGAAGAAGCCTAGGATGGAACACATATCAACCGTTACGCCAACACACGTTACTCCTGTTGTCTCTAGTGACGAAATAAGAGTAAGTTTTGGTGGAGTAAAGCCTATAATGACACCTAGTGTATTTCATGGAGAGAACATTGTTTCCTTTAACAATGCTCAAGACTCTCGGAACTCGTCCGCTGATGATAAAGAACCATTGCCCGGAAAGGAGTCTAACCCAAGCCATACGAATGCGGAGATTGCATGCTAA	1002	0.489	MEEKENFGDVSAAESFHVAPRVETIDFSGASTPTPAPGTGTGTDGKKKRGRPRKYGPDGKPTAAAAGALSPMPISASIPLTGEFSGWKRGKGRSVESIKKSSFKYDFESPGPGPGEGIQYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRGICVLSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGVTKSRSGGMSVSLAGPDGRVMGGGLAGLLIAAGPVQVVVGSFLPGHQLEHKSKKPRMEHISTVTPTHVTPVVSSDEIRVSFGGVKPIMTPSVFHGENIVSFNNAQDSRNSSADDKEPLPGKESNPSHTNAEIAC	333

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90735g00013	333	MobiDBLite	consensus disorder prediction	23	70	-	-
	Stsc90735g00013	333	SUPERFAMILY	AF0104/ALDC/Ptd012-like	125	244	-	-
	Stsc90735g00013	333	Pfam	Plants and Prokaryotes Conserved (PCC) domain	128	241	IPR005175	-
	Stsc90735g00013	333	Gene3D	-	128	261	-	-
	Stsc90735g00013	333	CDD	DUF296	127	241	IPR005175	-
	Stsc90735g00013	333	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	24	313	IPR039605	GO:0003680
	Stsc90735g00013	333	MobiDBLite	consensus disorder prediction	301	333	-	-
	Stsc90735g00013	333	FunFam	AT-hook motif nuclear-localized protein 1-like	128	259	-	-
	Stsc90735g00013	333	ProSiteProfiles	PPC domain profile profile.	123	265	IPR005175	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90735g00013	Stsc-Chr90735	100275	105230	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90735g00013	34	256	AT-hook Motif Nuclear Localized (AHL) Family	AT5G62260	62.083	2.63e-88	269

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90735g00013	-		-	gmx:100789179	472.241

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