Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90735g00004 ATGCTTGATGAGCAGTTAGAGCACATTGTTCTTGTGCATTATCGTGATATTAAAGAGGGTTCCAAGTCCAGCATCTCACATCCCCCTGCAGATCCAGTAACCTTGGCTTGTAGCTCTCAAACAAGTTCAGTGCCTTCCTCTGTCAAAATAGAGTCACCTATATCCTTATTTCAAACATCTGTTAGATCAACTGCAAATGAAGTTGAGCAGGCTGGACCAGCTTCAGTGTGTGATGATGGGCACTCAGAGAATGGTCCTCGAGCCTTGTCTCATGCTTGGCCTATTGACACTTCAATAACTCACAGTGCACGGCTGCTTGGGCATGAAGCCACTGGTTTTGCTGATTTGATGAAGGACCCTCTTATTTCATGGTCATCTTCTCTCCCTAGCTTTTATCCTGGCACTGGCTTATCTTCATGTGAAACAATAGAGAACTCCAGTAGAATCACATTTGATATGAATGATAGAGAACTTCATGTAGAAGCAGCAGATCCCACAAATCAAAATGTTCAAAATTTCAGAGATAGGCTCATGACTGATGTGTACATACAGCCAGTTACAGGAATTTCACAGGCTGTAAATCAGGTGCAAAAGGAACATGATTTAGTTTCATTGCATACCCAATTCCATCATCATCCTGTTGCAGCTACAAAGAACCTAGTTGAGCAAAACTTCCAAGATGGTGGTACGGACAATGATAACCCAGAAAAGGTTGAATCTAGGGAATTGAAGAAGCTTGATAGTTTTGGAAGGTGGATGGATAAGGATATAGGTGAAGATTGTAATAATTCATTGATGGCTTCAGATTCTGGCAATTACTTGAAATCACTTGATGCTAATGATGAAGACAAGGAGGTATCCAGTTTACCAGACATGCACTTGGATATGGAATCATTAAGTCCCTATCTTTCCCAAGAACAACTGTTTAGTATCATTGACTTTGCTCCAGATTGGGCATATGTTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTGGGGAGTAAAAATCTTTCGATCGAGAAGACATGGGGGTGTATGTTTGGTGAAATTGAGGTTTCAGCTGAGGTATTGGCTGAGAATGTCATACAGTGTCAAACTCCTTTGCATTCACCGGGCCGTGTTCCATTCTATGTAACCTGCAGTAATAGACTAGCCTGCAGTGAGATCAGAGAATTTGAATATCTTGAAAACCCAACTAAATCTGTAAGCCATGGGGGTGTTGAAATCAAACCAAAAGATGAAGTGCGGCTTGAAGTGCGACTACTTAAACTGTTAGACTTGGGACCTGAGAGTATGTATTGGAAATGCTCTGTTCCCGAATGTGAAAACTGTAAACTTAAAAGGACAATGTATTTGACTAGAGATGAAAATGAGAATTTCGAGATCTGTGAAAGCAATCACATGAGCTCTAGAGATGTGTTATTTCAAAGATTGGTTAGTGACAAACTTTATGGATGGTTGGTATTTAAGATTCATGAAGGAGGAAAAGGCCCCAACGTGTTGGACATTGAAGGTCAAGGAGTTATACATTTGGCTGCTGGTCTTGGTTATGTGTGGGCTATGGACCCTGTAGTTTCTGCGGGTATTAGTCCAAACTTCAGAGATGCTCATGGAAGAACAGGACTTCACTGGGCATCATATTTTGGGAGAGAGGAAACTGTGATTGCACTAGTCAAATTAGGTGCAATCCCAGGTCTTGTTGATGACCCAACATCAGCATATCCTCGAGGACAAACAGCAGCTGATTTAGCTTCAAGTAGAGGGCACAAAGGTATTGCTGGATATCTGGCTGAGGCAGATCTGGAATGTCAATTGTCTAAATTAACTGTCAATGAAAATGAGATGGACAACATTACCACAAACTTAGCAACTGACAGTGCATTTGAGTCTGCTGATACTGATTCATCAAATATGACAATGGATGAGAAGCACTATCTAAGAGAGTCACTTGCTGCTTTTCGAAAATCAGCTTATGCTGCTGCTTCAATCCAAGCAGCCTTTAGAGCAAGATCATTCTGTCAAAGACAACTAGCAAACAATTGCAGTGATATTTCTGAAGATGCACTTGACCTAGTTGCTGATTCTTTAAAAAAGGTTCAGAAGATGGATCACTTTGAGGATTATCTGCATTCTGCAGCTTTAAAGATTCAAAAGAGATACCGTGGGTGGAAAGAAAGAAAAGATTTTTTGAAAATACGCAACCGCATTGTAAAAATTCAGGCTCATGTTAGAGGTCACCAAGTTCGGAAGAAGTACAAAATAGTTGTTTGGTCAGTTGGCATCGTGGAAAAGGCGATACTGCGTTGGAGACGGAAAAGTGTTGGTCTGCGAGGATTCCGGGTTGTGCAGTCAGCTGGGACTGTGTCTGGAGAGCCTGAATATGAATTTCTTAGCATTGGGAGGAGACAGAAATCGGCTGATGTGAAGAAAGCTCTGGATAGAGTTAAGTCCATGGTTCACAACCCAGAGGCCCGTGATCAGTACATGAGGCTTGTCATGAAATCTCAAAATTTTAAGAGTGATGATGGTGGTAGCTGTTAA 2547 0.4138 MLDEQLEHIVLVHYRDIKEGSKSSISHPPADPVTLACSSQTSSVPSSVKIESPISLFQTSVRSTANEVEQAGPASVCDDGHSENGPRALSHAWPIDTSITHSARLLGHEATGFADLMKDPLISWSSSLPSFYPGTGLSSCETIENSSRITFDMNDRELHVEAADPTNQNVQNFRDRLMTDVYIQPVTGISQAVNQVQKEHDLVSLHTQFHHHPVAATKNLVEQNFQDGGTDNDNPEKVESRELKKLDSFGRWMDKDIGEDCNNSLMASDSGNYLKSLDANDEDKEVSSLPDMHLDMESLSPYLSQEQLFSIIDFAPDWAYVGVRTKVLIVGTFLGSKNLSIEKTWGCMFGEIEVSAEVLAENVIQCQTPLHSPGRVPFYVTCSNRLACSEIREFEYLENPTKSVSHGGVEIKPKDEVRLEVRLLKLLDLGPESMYWKCSVPECENCKLKRTMYLTRDENENFEICESNHMSSRDVLFQRLVSDKLYGWLVFKIHEGGKGPNVLDIEGQGVIHLAAGLGYVWAMDPVVSAGISPNFRDAHGRTGLHWASYFGREETVIALVKLGAIPGLVDDPTSAYPRGQTAADLASSRGHKGIAGYLAEADLECQLSKLTVNENEMDNITTNLATDSAFESADTDSSNMTMDEKHYLRESLAAFRKSAYAAASIQAAFRARSFCQRQLANNCSDISEDALDLVADSLKKVQKMDHFEDYLHSAALKIQKRYRGWKERKDFLKIRNRIVKIQAHVRGHQVRKKYKIVVWSVGIVEKAILRWRRKSVGLRGFRVVQSAGTVSGEPEYEFLSIGRRQKSADVKKALDRVKSMVHNPEARDQYMRLVMKSQNFKSDDGGSC 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90735g00004 848 ProSiteProfiles Ankyrin repeat profile. 539 571 IPR002110 GO:0005515
Stsc90735g00004 848 Gene3D - 477 697 IPR036770 -
Stsc90735g00004 848 Pfam IQ calmodulin-binding motif 712 731 IPR000048 GO:0005515
Stsc90735g00004 848 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Stsc90735g00004 848 ProSiteProfiles IQ motif profile. 734 758 IPR000048 GO:0005515
Stsc90735g00004 848 FunFam Calmodulin-binding transcription activator 2 710 758 - -
Stsc90735g00004 848 SMART ANK_2a 539 568 IPR002110 GO:0005515
Stsc90735g00004 848 SMART ANK_2a 578 607 IPR002110 GO:0005515
Stsc90735g00004 848 SUPERFAMILY E set domains 311 396 IPR014756 -
Stsc90735g00004 848 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 838 - -
Stsc90735g00004 848 ProSiteProfiles Ankyrin repeat region circular profile. 539 564 - -
Stsc90735g00004 848 Gene3D - 709 757 - -
Stsc90735g00004 848 Gene3D Immunoglobulins 304 403 IPR013783 -
Stsc90735g00004 848 SUPERFAMILY Ankyrin repeat 490 601 IPR036770 -
Stsc90735g00004 848 FunFam Calmodulin-binding transcription activator 2 304 401 - -
Stsc90735g00004 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 703 761 IPR027417 -
Stsc90735g00004 848 ProSiteProfiles CG-1 DNA-binding domain profile. 1 23 IPR005559 GO:0003677
Stsc90735g00004 848 CDD IPT 310 398 - -
Stsc90735g00004 848 SMART iq_5 710 732 IPR000048 GO:0005515
Stsc90735g00004 848 SMART iq_5 733 755 IPR000048 GO:0005515
Stsc90735g00004 848 ProSiteProfiles IQ motif profile. 711 740 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90735g00004 Stsc-Chr90735 37916 43280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90735g00004 1 847 CAMTA Transcription Factor Family AT5G09410 35.224 3.09e-156 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90735g00004 K21596 - gmx:100818336 1139.41