Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90734g00004 ATGACTACCCAACATGAAGATACATTTTTCCTTCTCAAAGAAACCACGGCCTCCATTTTGATCTTCTTTATCAGTCATCTCTTCTTCCGTTCAATTATCCTCCGAAACCGTCACCGGAACCGGAAAGTTCTTCCACCTGGCCCAAGGGGGTGGCCAGTTGTTGGCGCACTCCCACTCCTGGGAAACATGCCTCACGTCACTCTCTCCGAATTGGCCAAAAAATACGGGCCTGTCATGTACCTGAAAATGGGCTCAAACAACATGGTTGTTGCTTCGAGTCCCAGCGCGGCCCGGGCTTTCCTGAAAACCCTTGACCAAAACTTCTCGAACCGGCCTCCGAATGCGGGTGCAACTCACTTAGCTTATGACTCGCAGGACATGGTTTTTGCTGATTATGGAGCCAAGTGGAAGTTGCTTAGGAAACTAAGCAACTTGCACATGCTTGGTGGAAAGGCTCTCAACGATTGGGCTCATGTTCGTGAGAGAGAGATGGGGTACATGCTTGCTGCAATGCATGACTGCAGCAAGAAAGGAGAGGCGGTGGTGGTGGCGGAGATGCTGACATATGCCATGGCTAACATGATAGGCCAAGTGTTACTAAGCCAGCGAGTGTTCCATACAAAGGGAACGGAGTCAAATGAGTTCAAGGACATGGTGGTTGAGCTCATGACTGTTGCCGGGTACTTCAACATTGGAGATTTTATTCCTTTCTTGGCCAGGCTTGATCTGCAGGGAATAGAGCGAGGGATGAAGAGATTACACAAAAAGTTTGATGCATTATTGACAAGGATGATTGAGGAACATGGAGCTTCTAGTCATAAGCGTAAGGCTAAACCTGATTTCTTGGACGTCCTCATGGCTCATCATCAAAGTCAAAACTCTGATAGTGGGGATAATTTGACCTTAACCAACATCAAGGGTCTCCTCCTGAATCTATTCACAGCAGGCACTGATACATCGTCAAGTATCATAGAGTGGGCAATGACAGAGATGCTCAGAAAACCCATTATCATGAAGAAAGCTCAAGAAGAAATGGACAAAGTGATAGGAAAGCAAAGAAGGCTGAAAGAATCCGACGTCGAAAACCTTCCATACTTGCAGGCCATATGCAAAGAGACGTACAGAAAACATCCATCAACACCACTGAATCTGCCTCGAATCTCAACTGAGCCATGCCAAGTGAACGGCTATTACATTCCCAAGAACACGAGGCTCCTTGTGAACATCTGGGCCATAGGACGTGACCCACAGGTGTGGGAGAACCCTTTAGAGTTCGAGCCGGAGAGGTTTCTGGGTGGAAAGAATGCAAAGATCGATCCGCGCGGAAATGATTTTGAGTTGATTCCATTTGGTGCTGGGAGAAGAATTTGTGCTGGGACAAGGATGGGAATTGTGCTTGTTCAATACATTTTGGGAACTTTGGTGCATTCCTTTGATTGGAAGCTTCCAAATGGGGTTGTGGAATTGAACATGGAAGAGACCTTTGGACTTGCCTTGCAGAAAAAGATCACTCTTGCTGCTATTGTTAGCCCTAGATTGCCACAAAGTGCTTATACCCCTTAG 1563 0.469 MTTQHEDTFFLLKETTASILIFFISHLFFRSIILRNRHRNRKVLPPGPRGWPVVGALPLLGNMPHVTLSELAKKYGPVMYLKMGSNNMVVASSPSAARAFLKTLDQNFSNRPPNAGATHLAYDSQDMVFADYGAKWKLLRKLSNLHMLGGKALNDWAHVREREMGYMLAAMHDCSKKGEAVVVAEMLTYAMANMIGQVLLSQRVFHTKGTESNEFKDMVVELMTVAGYFNIGDFIPFLARLDLQGIERGMKRLHKKFDALLTRMIEEHGASSHKRKAKPDFLDVLMAHHQSQNSDSGDNLTLTNIKGLLLNLFTAGTDTSSSIIEWAMTEMLRKPIIMKKAQEEMDKVIGKQRRLKESDVENLPYLQAICKETYRKHPSTPLNLPRISTEPCQVNGYYIPKNTRLLVNIWAIGRDPQVWENPLEFEPERFLGGKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVQYILGTLVHSFDWKLPNGVVELNMEETFGLALQKKITLAAIVSPRLPQSAYTP 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90734g00004 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Stsc90734g00004 520 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 CDD CYP75 76 512 - -
Stsc90734g00004 520 Coils Coil 338 358 - -
Stsc90734g00004 520 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 PRINTS E-class P450 group I signature 190 208 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 PRINTS E-class P450 group I signature 408 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 PRINTS E-class P450 group I signature 96 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 Gene3D Cytochrome P450 31 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 Pfam Cytochrome P450 45 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 PANTHER CYTOCHROME P450 98A9 20 518 - -
Stsc90734g00004 520 SUPERFAMILY Cytochrome P450 45 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90734g00004 520 FunFam Flavonoid 3',5'-hydroxylase 2 36 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90734g00004 Stsc-Chr90734 11537 16554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90734g00004 18 518 Cytochrome P450 AT5G07990 47.921 8.07e-177 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90734g00004 K13083 - gmx:547705 832.017