Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90733g00011 ATGGAAACCGGTGGTGATGATGGCCGTGGTCACGGCGGAAGAGGCCCACCCCGCCGCCAACAGCAACCACCGGACCTCAATCTTCAACCACAATGGCGTCGTCCCCAAACACCACCAACTACCTCTCACTCAAACCTCACTCTCCAACCAGAATGGCGTCGATCGAGGCAACCTCCATCAACATCCACTCCTTCTCATCCTCCGTATTCTGCCTCCGGCGGTGAAGAACAGCGTGAGCTCCGTCTCCAACCAGAATGGCGCCGCCCGAGGCCACCGACGACAACAACAACAACAACGACTTCTCCGGAACCGGAACGGAGACTACCGAGGCCCACTTCTTCATTCTGGAACCAGAACCAGTCTTATCGGAAGCCGCAGAGCTCGAGTTCCGGCGGTGAAAGTTCTAGAACTTCCAGCGCTGCTGATCATGCTGACTTTTGGCGACTTCCCTCAGATTCTCAAGTTCCCAAACTAGAAAGACTACAAATATCCAGACAGTTAGCTACCGCTTCTAGTACTGTCGAAAGAAAGGATAAGCTTTCACCTATCCGGAGACCTGACAATGGCGGCACATTGGCAATTCTAACTAGCAAACTCCGTGTTAATCATTTCCCTGTTAAGTTAAATCCAGAGAGTATAATCATGCATTACAATGTTGGCGTGAAACCAAAGTTTCCCTCGAAGCATGGCCGGCCTCAGAAATTATCAAAATCTGATCTGTCCATGATTAGAGATAAATTGTTTTCTGATGATCCACAGAGATTACCCTTGGATATGACTGCATATGATGGTGCAAAGAATATATTTAGTGCAATAAAATTACCAGAAGAAACCTTTACTGTAGAGCTTTCTGAAGGAGATGATGAAAAGACCCTTGCATATAGTGTTACCTTAACACTTGTTAATACATACAGGCTTTGCAAGCTAATGGACTATCTTAGTGGTCACAGCCTCTCGGTTCCCAGGGATATTTTACAAGGGATGGATGTGGTGGTCAAAGAGAATCCAGCTAGGCGCACTGTTGCAGTGGGACGACACTTCTATCCCACTAATCCACCTGTGGCACTGAAGGATCTTCGCCGTGGCATAATTGCTGTTGGTGGTTTTCAGCATAGTTTAAAGCCTACATTGCAGGGTCTGTCCTTATGCGTAGACTACTCTGTGTTGGCTTTCCGAAAGCAAGTGTCAGTCTTGGATTTCTTGCATGAGCATATAGATAATTTTAAGTTGGATGAATTTGAGTACTTCAGGAAGGATGTTGAAGACGCACTTATTGGATTGAAAGTTAGTGTCACTCATCGTAAATCCAAACAGAAATATACCGTTGCGAGATTAACACCTCAGAATACGAGGTATGTCACTTTCCCCATTGACAATGCTGAGGGGTGGAATATCTCAAAGAATGCCAGTCTTCTTACTTTCTTTAGAGACAAATATGGCAAAGACATTGTGTACAAAGATATTCCCTGTTTAGACTTAGGGAAAGGTAACAAGAAGAACTATGTTCCTATGGAATTCTGTGTTCTGGTTGGGGGACAAAAATATCCTAAAGAACGTTTGGATACAGATTCTGCAAAGACATTGAAAGCACTGTCACTAGCTCACCCAACTGAGAGGGAGAGTGCAATACAAAAGATGGTGCACTCAAGTGATGGACCTTGCGGTGGTGATGTGATAACAAATTTTGGGATGAGAGTGAACACGAACATGACAACAATTCTAGGACGTGTCATTGTCCCCCCAGAATTAAAGCTTGGTGATCCAAATGGCAAGGCTATCAAGGTATCGTTGGATCTAGAGAAATGTAACTGGAACCTTGTTGGAAGATCAATGGTAGAAGGCAAACCAGTTGATCGTTGGGCCATTCTTGATTTTACTAGTTCTGGGTCATATAAGCATCAATTGAGAGTCAACGAATTCGTTAATAGGCTTATTGGAAAATACCAAAGAATGGGTATAAACATGCAGGAGCCCATTTGGTATGAAGAGTCTTCAATGCAGATACTTGCAAGGCATGATTTGCTGTGTGAATTACTTCAAAAAATTAGCAATACTTGTAAACATAAGCATGGTCACCTGCAATTTCTCCTGTGTGTGATGACTAAGAAAAGTCCAGGTTATAAGTATCTCAAGTGGATTTCAGAGACCAAAGTTGGTATAGTGACACAATGCTGCTTATCTCATAGTGCTAATGAAGGAGATGACCTATTTTATACTAACCTGGCCCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATGTAGAGCTCAATCATATGTTCCCTTTCTTTGAAGGTGATAGGCATGTTATGTTTGTTGGGGCTGATGTCAATCATCCTGGTTCTCGGGACACCAAGAGTCCATCAATTGCTGCTGTGGTTGCAACTGTTAATTGGCCAGCAGCAAATCGTTATGCAGCACGTGTTTGCCCTCAGTACAATCGGAGCGAGAAAATACTAAACTTTGGGGAAGTTTGCTTTGAGCTTGTTGCATGTTATAGCAGAATAAATGGAGTCAGGCCAGAAAGAATCATCATTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAACGAAGAGCTACATGATTTGAAGAGAGAATTCCAAAGATTAAACTACTTCCCTACAATCACTCTTATTGTAGCACAAAAACGACATCAAACTCGATTCTTTCCAGAGGGTTGGAAGGATGGGTCTTCCAGTGGAAATATTTTGCCGGGGACGGTTGTTGATGCAAAAGTTACTCACCCTTTTGAGTTTGACTTCTACCTTTGTAGCTACTATGGAAGCATAGGTACCAGCAAACCCACTCACTACCATGTTTTATGGGATGAACACAAGTTTAAATCTGATGAATTGCAGAAGCTTATATATGACATGTGCTTCACCTTTGCAAAGTGCACTAAACCTGTATCCTTAGTTCCTCCGGTGTATTATGCCGACCTCGCTGCTTATAGAGGACGATTATACCATGAAGCACGGGTTGGGATGCAATCTATGAGATCAGTAGGATCCTCATCTTCTACGGCTTCTTTTGAGCAGGGGTTTTACAGGTTGCATCCTGACTTGGAAAACATGATGTTCTTCATCTAA 3099 0.4353 METGGDDGRGHGGRGPPRRQQQPPDLNLQPQWRRPQTPPTTSHSNLTLQPEWRRSRQPPSTSTPSHPPYSASGGEEQRELRLQPEWRRPRPPTTTTTTTTSPEPERRLPRPTSSFWNQNQSYRKPQSSSSGGESSRTSSAADHADFWRLPSDSQVPKLERLQISRQLATASSTVERKDKLSPIRRPDNGGTLAILTSKLRVNHFPVKLNPESIIMHYNVGVKPKFPSKHGRPQKLSKSDLSMIRDKLFSDDPQRLPLDMTAYDGAKNIFSAIKLPEETFTVELSEGDDEKTLAYSVTLTLVNTYRLCKLMDYLSGHSLSVPRDILQGMDVVVKENPARRTVAVGRHFYPTNPPVALKDLRRGIIAVGGFQHSLKPTLQGLSLCVDYSVLAFRKQVSVLDFLHEHIDNFKLDEFEYFRKDVEDALIGLKVSVTHRKSKQKYTVARLTPQNTRYVTFPIDNAEGWNISKNASLLTFFRDKYGKDIVYKDIPCLDLGKGNKKNYVPMEFCVLVGGQKYPKERLDTDSAKTLKALSLAHPTERESAIQKMVHSSDGPCGGDVITNFGMRVNTNMTTILGRVIVPPELKLGDPNGKAIKVSLDLEKCNWNLVGRSMVEGKPVDRWAILDFTSSGSYKHQLRVNEFVNRLIGKYQRMGINMQEPIWYEESSMQILARHDLLCELLQKISNTCKHKHGHLQFLLCVMTKKSPGYKYLKWISETKVGIVTQCCLSHSANEGDDLFYTNLALKINAKLGGSNVELNHMFPFFEGDRHVMFVGADVNHPGSRDTKSPSIAAVVATVNWPAANRYAARVCPQYNRSEKILNFGEVCFELVACYSRINGVRPERIIIFRDGVSEYQFDMVLNEELHDLKREFQRLNYFPTITLIVAQKRHQTRFFPEGWKDGSSSGNILPGTVVDAKVTHPFEFDFYLCSYYGSIGTSKPTHYHVLWDEHKFKSDELQKLIYDMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEARVGMQSMRSVGSSSSTASFEQGFYRLHPDLENMMFFI 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90733g00011 1032 Gene3D - 764 1032 IPR036397 GO:0003676
Stsc90733g00011 1032 ProSiteProfiles PAZ domain profile. 395 511 IPR003100 GO:0005515
Stsc90733g00011 1032 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 198 995 - -
Stsc90733g00011 1032 ProSiteProfiles Piwi domain profile. 695 994 IPR003165 GO:0003676
Stsc90733g00011 1032 MobiDBLite consensus disorder prediction 22 70 - -
Stsc90733g00011 1032 SMART Piwi_a_2 695 993 IPR003165 GO:0003676
Stsc90733g00011 1032 Pfam Piwi domain 696 990 IPR003165 GO:0003676
Stsc90733g00011 1032 Pfam PAZ domain 414 525 IPR003100 GO:0005515
Stsc90733g00011 1032 SMART PAZ_2_a_3 395 533 IPR003100 GO:0005515
Stsc90733g00011 1032 Pfam N-terminal domain of argonaute 198 332 IPR032474 -
Stsc90733g00011 1032 SUPERFAMILY PAZ domain 390 549 IPR036085 GO:0005515
Stsc90733g00011 1032 CDD PAZ_argonaute_like 396 510 - -
Stsc90733g00011 1032 Gene3D paz domain 389 515 - -
Stsc90733g00011 1032 MobiDBLite consensus disorder prediction 89 141 - -
Stsc90733g00011 1032 Gene3D - 577 758 - -
Stsc90733g00011 1032 SMART DUF1785_2 341 394 IPR014811 -
Stsc90733g00011 1032 Pfam Argonaute linker 1 domain 342 393 IPR014811 -
Stsc90733g00011 1032 MobiDBLite consensus disorder prediction 169 189 - -
Stsc90733g00011 1032 MobiDBLite consensus disorder prediction 1 151 - -
Stsc90733g00011 1032 CDD Piwi_ago-like 558 992 IPR045246 -
Stsc90733g00011 1032 SUPERFAMILY Ribonuclease H-like 688 994 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90733g00011 Stsc-Chr90733 67042 71657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90733g00011 199 994 Eukaryotic Initiation Factors Gene Family AT1G48410 35.672 1.52e-141 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90733g00011 K11593 - gmx:100783571 1491.48