Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc90731g00013 | ATGCACGGCAACGTCCGATCGTGGAGAAGCGACGTCTTTCAGTGCAATCCAGCAAACAATCATAGCCACCGGAGCCACACTGCTTCTACACCCTCGACAACAACAGTTCTTTCTACATATGTATTGTCCTTCACAAGCTTTGTCGATCTCAAGAAAGCCGCCTTGAAAGATGAATTGGACTTAGAAGCAGGGCAGGGCATGGAGCTCGGATCTTCCACCACTCACATGGACACCGACATGGGCCTCTTCTTGGAGGAAGCCGACAAGGTCAAGGCTGAGATGGCCGCCCTGCGAGATATACTCGCAAGGCTCCAACAGGCCAACGAAGAAGGCAAATTGCTCCACAAGCCCGACGCTCTCAAATCCCTAAGAACCAGAATCAACTCTGACATTGTGATGCTTCTCGAGAAGGCCCGGGCTATTAAGGCGCATCTTGAAGACATGGACAAGGCTGATTCCGCTAACAGGAGGCTCTCCGGCACCACAACCGCCACCTACCGCACTCGGATCGCCGTCACGAACGGACTCCGAAAGAAGCTGAAGGAGCTGATGATGGAGTTCCAGGGGCTGAGGCAGAGGATGATGACGGAGTACAAGGACACCGTCGGAAGGAGGTACTTCACGGTTACCGGTGAGTACCCCGACGAGGAGGTGATCGAGAAGATCGTTTCGAGCGGCGAAGAAGAGGAGTTCTTGGGGAAGGCGATTCGAGAGCATGGGAGGGGGAAAGTGATGGAAACTATGGTTGAGATTCAGGACAGGCATGACGCGGCGAAAGAGATCGAGAAGAGCTTGCTTGAATTGCATCAGGTGTTCTTGGACATGGCAGTTATGGTGGAGGCTCAAGGGGAGAAGATGGATGACATTGAACACCATGTGATCCATGCTTCTCACTATGTTAAGGATGCTAACAAAGAGCTTGTAACCGCTAACAAGTATCAGAGGAACAGCAGGAAGTGGCTCTGCATTGGGATCATCATTCTTCTCATCCTCATCCTCCTCGTTGTCATTCCCGAGTCTTCTTAG | 1026 | 0.5205 | MHGNVRSWRSDVFQCNPANNHSHRSHTASTPSTTTVLSTYVLSFTSFVDLKKAALKDELDLEAGQGMELGSSTTHMDTDMGLFLEEADKVKAEMAALRDILARLQQANEEGKLLHKPDALKSLRTRINSDIVMLLEKARAIKAHLEDMDKADSANRRLSGTTTATYRTRIAVTNGLRKKLKELMMEFQGLRQRMMTEYKDTVGRRYFTVTGEYPDEEVIEKIVSSGEEEEFLGKAIREHGRGKVMETMVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVIHASHYVKDANKELVTANKYQRNSRKWLCIGIIILLILILLVVIPESS | 341 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc90731g00013 | 341 | SMART | SynN_4 | 75 | 199 | IPR006011 | GO:0016020 | |
| Stsc90731g00013 | 341 | PANTHER | SYNTAXIN | 92 | 328 | IPR045242 | - | |
| Stsc90731g00013 | 341 | CDD | SNARE_syntaxin1-like | 247 | 309 | - | - | |
| Stsc90731g00013 | 341 | CDD | SynN | 80 | 235 | IPR006011 | GO:0016020 | |
| Stsc90731g00013 | 341 | SMART | tSNARE_6 | 243 | 310 | IPR000727 | - | |
| Stsc90731g00013 | 341 | FunFam | Syntaxin 132 | 241 | 340 | - | - | |
| Stsc90731g00013 | 341 | ProSitePatterns | Syntaxin / epimorphin family signature. | 254 | 294 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Stsc90731g00013 | 341 | Gene3D | - | 243 | 338 | - | - | |
| Stsc90731g00013 | 341 | Pfam | Syntaxin | 83 | 283 | IPR006011 | GO:0016020 | |
| Stsc90731g00013 | 341 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 248 | 310 | IPR000727 | - | |
| Stsc90731g00013 | 341 | Gene3D | - | 75 | 202 | - | - | |
| Stsc90731g00013 | 341 | Coils | Coil | 87 | 110 | - | - | |
| Stsc90731g00013 | 341 | Pfam | SNARE domain | 285 | 336 | IPR000727 | - | |
| Stsc90731g00013 | 341 | SUPERFAMILY | t-snare proteins | 78 | 303 | IPR010989 | GO:0016020|GO:0016192 | |
| Stsc90731g00013 | 341 | Coils | Coil | 173 | 193 | - | - | |
| Stsc90731g00013 | 341 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 77 | 205 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc90731g00013 | Stsc-Chr90731 | 57579 | 58818 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc90731g00013 | 43 | 322 | SNARE and Associated Proteins | AT1G08560 | 63.380 | 2.57e-123 | 355 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc90731g00013 | K08486 | - | gmx:100816016 | 438.728 |