Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90730g00020 ATGGGGTTGATTGATCTCAACACGACCGAGGAAGATGAAACACAGACACTGTTATCTGGTTCTACAGGCTCAGCTTCATCACCTTCTCACTCTGGTATAAGCACTTCAGCCTCACCTTTGCCTCCACCTTCTTCTTCTTCTTCTTCTGTGTGCTTGGAGCTATGGCATGCTTGTGCAGGCCCTATGATCTCTCTCCCAAAGAAAGGAAGTGTTGTTGTGTACTTGCCACAAGGCCACTTTGAACAGGCTCAGGATTTTCCCCTCACTGCCTATAACATCCCACCTCATGTCTTCTGTCGTGTTCTTGATGTAAAGCTCCATGCAGAGGAAGGCAGTGATGAAGTCTATTGCCAGGTCTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGAAAAACTTGCGGCATGGGGTAGTTGATGTTGATGGTGAAGAAGATGATACTGAAGCTGTGGTGAAGTCAACAACACCCCATATGTTCTGCAAGACTCTTACTGCTTCTGATACTAGCACTCATGGTGGATTTTCTGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCACTGGATTACAGTCAACAAAGGCCTTCACAGGAGCTTGTGGCGAAGGATTTGCACGGCCTTGAATGGAAGTTTAGACATATATACAGGGGGCAGCCTCGGAGACATTTACTCACAACTGGATGGAGTGCATTTGTGAATAAGAAGAAGCTTGTGTCTGGAGATGCTGTGTTATTTCTTAGGGGCGACGATGGGGAATTAAGGCTTGGGATTCGTCGGGCTGCTCAACTGAAGAATGGTGGTATCTTTGCTGCTCCCGCAGTTCAGCAACTGAATCCTGGCTCAGTCATGAATGTTGTAAATGCTTTGTCTTCGAGAAGTGCCTTTAGTGTTTGCTATAATCCAAGGGCTAGCACCTCGGAATTCATCATACCGCCACACAAATTCTTAAAGAGCCTTGATTTTTGTTATTCAGTTGGAATGAGGTTCCAGATGCGCTTCAAAACTGAAGATGCTGCCGAGCGCAGATTCACTGGATTAATTGCTGGCATTGGTGATGCGGATCCGGTTAGATGGCCAGGATCAAAATGGAGATGCCTGTTGGTAAGGTGGGATGATGTTGAAGCCAGTAGGCATAACAGGGTTTCCCCATGGGAGATTGAGCCATCCGGGCATGCTTCCACTTCGAATAACTTGATGGCAGCTGGTTTGAAGAGGAGCAGAATCGGATCTTCAGGGAAACTAGAATTTCCACTTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTTAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATAGCCCTTATGATGGTATAAATGCTCAGAGTCCAAGGATATCCGAGTTAGGGAGGTGTTATCCTGGCTCCATTGGTTCTGGGACATCGGTGTTAGGAAGTAATATCAGAATCCCTCAAGTTGCCTCTGATTTTTCCTACAACAATGGCACAGGCTTTGGTGAATCATTCCGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATTTTTCCAAGCCAACCATATGGAAGGGCCTTGTCTATTGATGAGGCTCGCACAAATGGTCGGTTTGGACTTTTTGATGGTCATCATCTGGTTAGCCCCCGAAGTGGATGGCCCAACCAGGTGCATGACACTTCATCACATCTGCATGCATCTGTTGCATCAATGCAAGTGTCATCTCCTTCATCTGTGTTAATGTTCCAGCAAGTAGTTAATCCTGTTTCAAACTCGGAGCATATTAACAAGAGTAGCCAGGAGATAGATGGTAATAAAGTCCATTACCAACATTCATACCCAACTGAAGTGAAAGGTAGAACATTCGCATCGTTCCCAACCGATGAGCCCATTTTCTCTGGAAGAGCTAAGGAAGACATGAACTCATTTGAAATGTTTAACTTCCATAATCAGTTGGGCACTTCAAGGTCTATTGATTCAGCTTTGGCATTGAGAGAGAGTCAAGAGCTGGCATCTTCATGTAAAAGTAGCTGCAGACTCTTCGGTTTCTCTTTAACCGAGGATCCTCACATTACAAACAAAGAGGCTGCACCATCTTTGATCACTCGACAATTGAATTCAGGCCCTACATTTACTCAGCACGCCGAGGATAATTTTCCTCCCGGTCGTTCTCTGAGGACTAAAGCTGTTGAGAGTAACTTCACCAAAGGTGTATTGCAGTGTTGA 2211 0.4564 MGLIDLNTTEEDETQTLLSGSTGSASSPSHSGISTSASPLPPPSSSSSSVCLELWHACAGPMISLPKKGSVVVYLPQGHFEQAQDFPLTAYNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEKNLRHGVVDVDGEEDDTEAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKNGGIFAAPAVQQLNPGSVMNVVNALSSRSAFSVCYNPRASTSEFIIPPHKFLKSLDFCYSVGMRFQMRFKTEDAAERRFTGLIAGIGDADPVRWPGSKWRCLLVRWDDVEASRHNRVSPWEIEPSGHASTSNNLMAAGLKRSRIGSSGKLEFPLPNGIGTSDFGESFRFRKVLQGQEILGVNSPYDGINAQSPRISELGRCYPGSIGSGTSVLGSNIRIPQVASDFSYNNGTGFGESFRFQKVLQGQEIFPSQPYGRALSIDEARTNGRFGLFDGHHLVSPRSGWPNQVHDTSSHLHASVASMQVSSPSSVLMFQQVVNPVSNSEHINKSSQEIDGNKVHYQHSYPTEVKGRTFASFPTDEPIFSGRAKEDMNSFEMFNFHNQLGTSRSIDSALALRESQELASSCKSSCRLFGFSLTEDPHITNKEAAPSLITRQLNSGPTFTQHAEDNFPPGRSLRTKAVESNFTKGVLQC 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90730g00020 736 Pfam Auxin response factor 285 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc90730g00020 736 MobiDBLite consensus disorder prediction 1 42 - -
Stsc90730g00020 736 FunFam Auxin response factor 156 260 - -
Stsc90730g00020 736 Gene3D - 322 395 - -
Stsc90730g00020 736 FunFam Auxin response factor 321 392 - -
Stsc90730g00020 736 SUPERFAMILY DNA-binding pseudobarrel domain 151 264 IPR015300 -
Stsc90730g00020 736 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Stsc90730g00020 736 Gene3D - 156 260 IPR015300 -
Stsc90730g00020 736 SMART B3_2 158 260 IPR003340 GO:0003677
Stsc90730g00020 736 MobiDBLite consensus disorder prediction 8 42 - -
Stsc90730g00020 736 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Stsc90730g00020 736 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 48 688 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc90730g00020 736 CDD B3_DNA 156 258 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90730g00020 Stsc-Chr90730 87155 91064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90730g00020 46 512 B3 DNA Binding Superfamily AT5G60450 49.588 6.04e-145 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc90730g00020 B3 3e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90730g00020 K14486 - gmx:100789906 1077