Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90730g00014 ATGGAGATGAAGCAAGAGCAGAGTGCTGAAGAGTTGTTTCAAGCTCAAGCTCATTTATACAGCTATACTTACCATTCCGTTGGGTCTATGTGCCTTAAAAGTGCACTTCATTTGGGAATACCAGACATTATCCACAACCATGGCCAACCCATTACACTTGATGAGTTGGTCTTGGCACTTCAAATTGACCCTAACAAATCCGGATATGTGTATAGGCTCATGCGGTTCCTGGTGCATTCTGGATTCTTTGTTACAACCAAGATTGATGGTGGAAAACAAGAAGAAGAAGAAGAAATATTGGGGTATGATCTTACACCTTCCTCAAGGCTCCTCCTCAAAGACGCTGTCCCAACTCTCGCTCCTTATGTTCAAGCAATGTTTCATCCTGCTATACTTCACTCTCCTGAGTTCTTGGCAGAATGGTTCCACACAAATGAGCCTACACCCTTTCACACTGCACATGGCACAAGCTATTGGGACTATTTAAGCCAAAACCAAGAGTTTAATGCCCTCTTCAATGAAGCAATGATCAGTGACTCTGGAATGATGAATTTGGTGATCAAAGACTGCAAGTCTGTTTTTGACGGGCTGAATTCATTGGTTGATGTTGGTGGCGGAAAAGGCGCCATGTCTAGATTGCTTTCTGAGTCTCTGCCTCATTTGGAATGCGCAGTGCTCGATCTTCCACACGTTGTTGAAAACTTGCAAGATTGCAATAACTTGAAGTTTGTCGGGGGTGACATGTTTGATTCAATTCCTTCAGCCGATGCCACTCTTCTTAAGTTAGTTTTGCATGCTTATAGCGATGAAGATTGTGTCAAGGTACTGAAGAAGTGTAGAGAAGCTATTTCAGGGAAAGGTAAGGAAGGGAAAGTAATAATCATAGACATAGTGATCAATGAGAAGAATGNNNNNNNNNNAAAGCTGCTGTTGGATCTGTTAATGATGAGTCTGGTCCCTGGAAAAGAGAGGGAAGAAAAAGAATGGGAGAAGCTCTTCTTGGAAGCTGGATTCAGTCACTATAAGATTACTCCCATCTTTGGCATGAGGTCTCTTATTGAAATCTTTCCTTAG 1074 0.4199 MEMKQEQSAEELFQAQAHLYSYTYHSVGSMCLKSALHLGIPDIIHNHGQPITLDELVLALQIDPNKSGYVYRLMRFLVHSGFFVTTKIDGGKQEEEEEILGYDLTPSSRLLLKDAVPTLAPYVQAMFHPAILHSPEFLAEWFHTNEPTPFHTAHGTSYWDYLSQNQEFNALFNEAMISDSGMMNLVIKDCKSVFDGLNSLVDVGGGKGAMSRLLSESLPHLECAVLDLPHVVENLQDCNNLKFVGGDMFDSIPSADATLLKLVLHAYSDEDCVKVLKKCREAISGKGKEGKVIIIDIVINEKNXXXXKLLLDLLMMSLVPGKEREEKEWEKLFLEAGFSHYKITPIFGMRSLIEIFP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90730g00014 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
Stsc90730g00014 357 Pfam O-methyltransferase domain 138 339 IPR001077 GO:0008171
Stsc90730g00014 357 Gene3D Vaccinia Virus protein VP39 113 357 IPR029063 -
Stsc90730g00014 357 SUPERFAMILY "Winged helix" DNA-binding domain 9 114 IPR036390 -
Stsc90730g00014 357 PANTHER O-METHYLTRANSFERASE 11 342 IPR016461 GO:0008168
Stsc90730g00014 357 FunFam O-methyltransferase ZRP4 113 357 - -
Stsc90730g00014 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Stsc90730g00014 357 FunFam Coniferyl alcohol 9-O-methyltransferase 2 111 - -
Stsc90730g00014 357 Gene3D - 2 111 IPR036388 -
Stsc90730g00014 357 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Stsc90730g00014 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 118 354 IPR029063 -
Stsc90730g00014 357 CDD AdoMet_MTases 200 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90730g00014 Stsc-Chr90730 49117 51058 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90730g00014 26 356 Monolignol Biosynthesis Gene Families AT5G54160 32.174 4.60e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90730g00014 K22588 - qsa:O6P43_012698 441.039