Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90730g00005 ATGGCTTCTTCAAACAGACACTGGCCAAGCATGTTTAAGTCTAAGCCTTCATGGCAGCATGATATCACTATAACTACTGCTGCTTCTTCTTCTTCTTCTTCTTCAAGTAGAACAACGCCTTACTCTTGTGACGACAGAAGCCCTGAGCCCAAGCCCAGGTGGAACCCAAAGCCCGAACAAATTCGGATTCTGGAATCCATATTCAACTCTGGGATGGTGAACCCTCCCAGAGATGAAATCAGGAAGATAAGGGCTCAGTTGCAAGAGTATGGCCAAGTTGGTGATGCCAATGTCTTCTACTGGTTTCAGAATCGCAAGTCCAGAACCAAGCACAAGCTCCGCCATCTCCATAACAAGAACACTCCACCACCACCACCTCCTCCTCCATCATCCACCTCATCATCTTCCTCTGACAAGTCATCACCTCCACCACCCACCACTACCTATTTCTACAACACCGCCACTATTCCACCACCACCACCACCTGCTGAGACTTTCATCTTCCCTCTGCAACATCAAGGTAACAACAACAGTACTATCATAACATCATCATCATCATCATCACCACCGCAAGGGCTTTTCTTCTCTGAGCTCTCCAATGTGGTGCAAGCTCATCAGCCTCAGCCGCTGCCGCCGCCACCACCACATCATCAGCTGATGATGAATAACGTGGTTGGTCCTTGCACTAGTCTCTTGCTTAGTGAGATCATGAGTAGCACCAATAACATTTCTTCAAAGAAACATCATCATCAAGAACAAGAACTTGTCGCAAACAAGTCTGTCAAATTAATGCACCATGGCCACCACCACCACACACCAAAGCAGCTTAGTTTCTGCGTCACTCCACCTACCACTACAACTACTGCCACTCTCCTCCCTCCCACCACCACCACCGCCACCGTCAACATCCCACAAACAGCATCACTCCTGATGAATCATGAAGGAGTAGGCCATCTACAAGGTATTGGTGATGGAAGCGAGAAAATAATGGTGTTCATAAATGATGTGGCGTTTGAGGTGGCAGCGGGGCCATTAAATGTGCGGGAGGCGTTTGGGGAAGATGCAGTCCTCATCCACGCCATAACTGGTCAACCTCTTGTCACTAATCAATGGGGTCTTACCCTCCACTCTCTCCACCATGGCGCTTCTTATTATCTGATTTAG 1164 0.4828 MASSNRHWPSMFKSKPSWQHDITITTAASSSSSSSSRTTPYSCDDRSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRTKHKLRHLHNKNTPPPPPPPPSSTSSSSSDKSSPPPPTTTYFYNTATIPPPPPPAETFIFPLQHQGNNNSTIITSSSSSSPPQGLFFSELSNVVQAHQPQPLPPPPPHHQLMMNNVVGPCTSLLLSEIMSSTNNISSKKHHHQEQELVANKSVKLMHHGHHHHTPKQLSFCVTPPTTTTTATLLPPTTTTATVNIPQTASLLMNHEGVGHLQGIGDGSEKIMVFINDVAFEVAAGPLNVREAFGEDAVLIHAITGQPLVTNQWGLTLHSLHHGASYYLI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90730g00005 387 MobiDBLite consensus disorder prediction 110 166 - -
Stsc90730g00005 387 Pfam Homeodomain 51 111 IPR001356 GO:0003677
Stsc90730g00005 387 CDD homeodomain 50 112 IPR001356 GO:0003677
Stsc90730g00005 387 MobiDBLite consensus disorder prediction 23 43 - -
Stsc90730g00005 387 FunFam WUSCHEL-related homeobox 11 51 118 - -
Stsc90730g00005 387 SMART HOX_1 49 116 IPR001356 GO:0003677
Stsc90730g00005 387 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 387 IPR044557 GO:0003700|GO:0050793
Stsc90730g00005 387 Gene3D - 51 116 - -
Stsc90730g00005 387 ProSiteProfiles 'Homeobox' domain profile. 47 112 IPR001356 GO:0003677
Stsc90730g00005 387 MobiDBLite consensus disorder prediction 23 59 - -
Stsc90730g00005 387 MobiDBLite consensus disorder prediction 133 153 - -
Stsc90730g00005 387 MobiDBLite consensus disorder prediction 44 58 - -
Stsc90730g00005 387 SUPERFAMILY Homeodomain-like 47 114 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90730g00005 Stsc-Chr90730 20971 22380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90730g00005 1 387 Wox Gene Family AT2G33880 42.308 1.63e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc90730g00005 Homeodomain 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90730g00005 - - adu:107468215 449.129