Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90730g00003 ATGGCTATAGTTTCTCAATCCCAAACAGAGTTACCTTTAAATGAGAATGATTCTCAGGACATGGTTATATACCAAGTCCTAAACGAGGCCAGTAATAATAATAATCATCAGCAGCAGCATGAAGCATCGTTCATGGTGATGAGTAATGGTGGCAGAGGAGAACAACGGCGTGGCATAGAAGCAAAGAGGAGCATAGAGAAGAAGCACTACAGAGGAGTAAGGAGGAGGCCATGGGGGAAGTATGCGGCCGAGATAAGAGACTCGGCGAGACAGGGAGCAAGGATATGGCTAGGGACGTTCCAAACAGCGGAAGAAGCAGCCATGGCTTATGATAAAGCTGCATTCAAGATGAGAGGTTCCAAGGCCTTATTGAACTTCCCTGCTGAGGTTGTTGCTGCTGCTTCCACTACTAATAATACCACCACTTAG 429 0.4639 MAIVSQSQTELPLNENDSQDMVIYQVLNEASNNNNHQQQHEASFMVMSNGGRGEQRRGIEAKRSIEKKHYRGVRRRPWGKYAAEIRDSARQGARIWLGTFQTAEEAAMAYDKAAFKMRGSKALLNFPAEVVAAASTTNNTTT 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90730g00003 142 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Stsc90730g00003 142 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Stsc90730g00003 142 FunFam Ethylene-responsive transcription factor 2 68 129 - -
Stsc90730g00003 142 SUPERFAMILY DNA-binding domain 69 129 IPR016177 GO:0003677
Stsc90730g00003 142 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Stsc90730g00003 142 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Stsc90730g00003 142 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Stsc90730g00003 142 PANTHER DNA-BINDING DOMAIN 21 130 IPR044808 GO:0003700|GO:0009873
Stsc90730g00003 142 CDD AP2 68 128 IPR001471 GO:0003700|GO:0006355
Stsc90730g00003 142 Gene3D AP2/ERF domain 68 129 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90730g00003 Stsc-Chr90730 9342 9770 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90730g00003 3 130 AP2-EREBP Transcription Factor Family AT4G17500 47.260 4.25e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90730g00003 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90730g00003 K13433 - zju:107411165 172.555