Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90730g00002 ATGGATAATAATCATAGTAATGATCATGATTCAAATTCTGGAGGGATTCTTGAGAATGTATGGGCTAAAATTATCAGCAATAATCAAAGAGGAGAAGATCATCATGTCAGAACATATGGTGATGCTGATGCAGCAGAACAACCCTGCAATTCATCATGGGAAGAGCTTCCACAACTTGATGGAAGAGACAACAATATTCTGCAGAGGCTTCCAAGCTTAGGGAGGTGGTTGTCAATGGGAGCTGATTTCTGGGAAGATGTTTTAGATGGAATTGTTATTAACCCAAATGATCCACCACCAGCAGCAGCAACAAAGAATAATGAACAAGATTGTAATAATAACAAGGTAGAGTTAGAGAAGAGGGTGATGAAAACAGAGAAGAAGGTGGTTACAAAGCACTACAGAGGAGTAAGGAGAAGGCCATGGGGGAAATATGCGGCGGAGATTCGAGACTCGTCGAAGAAAGGTGCTAGAGTTTGGCTTGGGACATTTGAGACAGCTGAGGAAGCAGCTTTGGCTTATGATAAAGCTGCTTTGAGGATTAGAGGGCCAAAGGCATACCTCAATTTTCCATTTGAGTCTGTTTCAAAAGCTATGCAATTTGGTCATAAAGTTGATCATCATTGTAATAATAACTTGTCACGGAAGAGAGGATCTGAATTTGGTGATGTGGTGTTGAATGAGGAACCTCCAACAAAGAAGGTAGCAGCAGGAGGGTTTGATGATGAAGGGATGTTAGATGTTTTTGTGTTTCAGGATTTAGGAAGTGATTACTTGGATAATTTGCTGTCTTCTTTTTAA 801 0.4032 MDNNHSNDHDSNSGGILENVWAKIISNNQRGEDHHVRTYGDADAAEQPCNSSWEELPQLDGRDNNILQRLPSLGRWLSMGADFWEDVLDGIVINPNDPPPAAATKNNEQDCNNNKVELEKRVMKTEKKVVTKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPFESVSKAMQFGHKVDHHCNNNLSRKRGSEFGDVVLNEEPPTKKVAAGGFDDEGMLDVFVFQDLGSDYLDNLLSSF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90730g00002 266 Gene3D AP2/ERF domain 132 193 IPR036955 GO:0003700|GO:0006355
Stsc90730g00002 266 CDD AP2 132 191 IPR001471 GO:0003700|GO:0006355
Stsc90730g00002 266 ProSiteProfiles AP2/ERF domain profile. 133 191 IPR001471 GO:0003700|GO:0006355
Stsc90730g00002 266 PRINTS Ethylene responsive element binding protein signature 157 173 IPR001471 GO:0003700|GO:0006355
Stsc90730g00002 266 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Stsc90730g00002 266 Pfam AP2 domain 133 183 IPR001471 GO:0003700|GO:0006355
Stsc90730g00002 266 FunFam Ethylene-responsive transcription factor 2 132 193 - -
Stsc90730g00002 266 Coils Coil 101 128 - -
Stsc90730g00002 266 PANTHER DNA-BINDING DOMAIN 110 207 IPR044808 GO:0003700|GO:0009873
Stsc90730g00002 266 SMART rav1_2 133 197 IPR001471 GO:0003700|GO:0006355
Stsc90730g00002 266 SUPERFAMILY DNA-binding domain 133 192 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90730g00002 Stsc-Chr90730 7215 8088 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90730g00002 14 247 AP2-EREBP Transcription Factor Family AT4G18450 39.419 1.32e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90730g00002 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90730g00002 - - aip:107624160 370.548