Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90729g00016 ATGTCTGCAAATTCTGAGAATATTGCGGTTTGTTCTCTTTGCCAGAAGGCATTATATCCTGATAATGAGATGACAAGTGATCCTGCGACGATTGGTGTATGTGGTGATTGTAAGTTTTTATTGCATGAAGACTACGGGAATCATATGGATACCCCTCAGAGCTTGCAAAGAAGGGTTAGAGGCCGGTTCAGGCGCAACAGCTCTGAATCGGTTGACAATATGGTTAATAATTTGAGGCAAAGCAGATCTGCGACTGCTTCTTTGGAGGACGTTCAACAAGCAGTGGAGGGGGATGCCTCTGCTTGGTCGGTGCAGTATGCTAGTACACATAATACCCCTAGTGGTTCTAGGAGATGGAGGCGGGTTCTCTCTGATACCGACAGTGATGGTTTCGATAATTGGAGCTCACTTTATGGTGAAAATGAATCAAATGAGAGCTTTAGACCATATAGGTTATCCCGTCTTGAGACTGATTCCCTCTCTTTCAGTGCTTATGGAGGTGACTCAGATGTCTCCATGGATAGACGTAGTATTATACATAGAGGAAGGTTTGCTTTACTAGATGTGGGAGATGAGTTTGATAGTGACACCGATATAGATCCAATGCATGCCAGGATCAGTCACTGGAACTCAAATGATATGGAAGATGATGAGGAAGAGGAGGAGGAGAATGATGATAATGATGATGATGATGATGATGATGATGAAGAGGAGGAGGAGGAAGAGGATGTCGGACGGGAATGGGAAATAGCTGATGCTGTGGAAGCGGAAGCCACAGCGCGCCTTCAAATGTTTTTAACCTCGAATTCAAATTCAAATAGAGGTAGCAATATTCGAGCACGAAGGTTTTATTCCGCTGAATCTGAGGTTGTCCAAATGGTCAGTAGCTGGGGAGCTGATTTGGAGGATACTGGTTTACCTCCCTATGATGCCAACTTTGGAGACTATCTTGATGCTAGACAATTTGAGGATTTTCTCGAGCATCTTGCCGAGAATGACAATTTGAGACGAGGAGCACCTCCTGCATCTCTGTCATTTGTGAACAATCTGCCCCGTGTGGTCGTTGACAAAGACCACGAGAAGCATGGTGAACTAGTTTGTGCAATTTGCAAGGATGCGTTGGTACCTGGCACCGAAGCAAGTCAGCTTCCGTGCTCGCACCTTTATCATGGAAGTTGCATTTTACCGTGGTTGAGCACACGGAATTCATGTCCTCTCTGTCGCTATGAGCTCCCAACTGATGACAGAGATTATGAAGAGGGAAAGCAGAACAGTGTTCTTCAGCCTGTGAACCATCACAGACAGCAACTAGATATGGTGGATGTGGATGTGGATGATAGTTCCTCTGATGTCTCTGTCTTGGCTGCAGTAAACGAAGCAGATAGTACTAGTCCACGTGTAATACATCGTACAGAAGCTGTAAGTTCGAATTTTTCCACGAATTCTTCAGCAGCCATAAGAGGTGGTAGAGGTAGATGGTTTTTTCTTGCCGCGGCTCCAATAGTTAGTTTAGTTGGCATTGTACTTGTCCTGTGGTTAGGTAACTCACAGATTGAAGCGGATAGGCATCTCGGCCGGCGCAACATATCTGCCCAAAATCAGCATGCTGTCACTGTTGCTGCACCAGTCCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTGCCCTTTCTAA 1671 0.4548 MSANSENIAVCSLCQKALYPDNEMTSDPATIGVCGDCKFLLHEDYGNHMDTPQSLQRRVRGRFRRNSSESVDNMVNNLRQSRSATASLEDVQQAVEGDASAWSVQYASTHNTPSGSRRWRRVLSDTDSDGFDNWSSLYGENESNESFRPYRLSRLETDSLSFSAYGGDSDVSMDRRSIIHRGRFALLDVGDEFDSDTDIDPMHARISHWNSNDMEDDEEEEEENDDNDDDDDDDDEEEEEEEDVGREWEIADAVEAEATARLQMFLTSNSNSNRGSNIRARRFYSAESEVVQMVSSWGADLEDTGLPPYDANFGDYLDARQFEDFLEHLAENDNLRRGAPPASLSFVNNLPRVVVDKDHEKHGELVCAICKDALVPGTEASQLPCSHLYHGSCILPWLSTRNSCPLCRYELPTDDRDYEEGKQNSVLQPVNHHRQQLDMVDVDVDDSSSDVSVLAAVNEADSTSPRVIHRTEAVSSNFSTNSSAAIRGGRGRWFFLAAAPIVSLVGIVLVLWLGNSQIEADRHLGRRNISAQNQHAVTVAAPVQRESRSRRWWCPF 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90729g00016 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 414 IPR013083 -
Stsc90729g00016 556 ProSiteProfiles Zinc finger RING-type profile. 367 408 IPR001841 -
Stsc90729g00016 556 MobiDBLite consensus disorder prediction 205 250 - -
Stsc90729g00016 556 Pfam Ring finger domain 367 408 IPR001841 -
Stsc90729g00016 556 SUPERFAMILY RING/U-box 349 415 - -
Stsc90729g00016 556 SMART ringv_2 366 408 IPR011016 GO:0008270
Stsc90729g00016 556 CDD RING-H2_PA-TM-RING 366 408 - -
Stsc90729g00016 556 SMART ring_2 367 407 IPR001841 -
Stsc90729g00016 556 MobiDBLite consensus disorder prediction 213 248 - -
Stsc90729g00016 556 FunFam E3 ubiquitin-protein ligase RING1-like 328 414 - -
Stsc90729g00016 556 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 215 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90729g00016 Stsc-Chr90729 97564 100256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90729g00016 1 556 C3H Transcription Factor Family AT5G01980 38.079 4.91e-100 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90729g00016 - - pvu:PHAVU_008G078700g 624.78