Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90729g00014 ATGGAACAAAACACAGACATGTTCAGGGTACCTTCTACAGGAGGAGGAGGAACGGGACCATCGCCTTCGTCTTCGTCTTTGGTTTCTTCGTCATCTTCGTCATTGTCGTCTTCGAATTCTAGAAGGTTCGGAACAATTTCTCCCTCTAACATCATCAACGCGCCATTGTCACTATTATTAGAATATTCAGGGATCCTTCGCAACAACAATAGCAGCACCACAAGGTCGAATTTCAATCCCCACGAACCTAACCCTAACCCTAATTCGGAGCCTTCCGTAAATGACGGCGAGGTATCGATCAGGATCATTAGTCCCTCCGAACATGATAATCACCGTCACAGGGAGGAGCAACCTTCGTCTTCTGGTGGGGGTGGTTTGGTAGTGGGGCTTTCTCACGATGAAGGTGTGTCCGTTATGCCCAATTCGAGTACCGGAGACGGCGGGATTGGGAATGAGAATGGAAACGGCGATGCGGGGACCGGTGGCGGCGAGGGTGGCGGCAATGGGAGGGATTCTTCTTACCAGCGGTATGATATTCAGCATGCTGCAAGGTGGGTGGAGCAGGTTCTTCCGTTTTCCTTGCTCCTCTTGGTTGTCTTCATCCGCCAGCATTTGCAAGGCTTTTTCGTTACAATTTGGATTGCTGCTGTCCTTTTCAAGTCGAATGACATTCTAAGGAAGCAAACAGCTCTGAAGGGAGAGAGGAAAGTACCTGTTCTCATTGGGATTTCTGTTGCATTCTCACTTCATGTGATTAGCATCTATTGGTGGTATCAGAATGATGATCTGATGTATCCATTGGTCATGCTTCCTCCGAGAGAGATACCGCCTTTCTGGCATGCGATTTTCATCATCATGGTTAATGACACTTTGGTTCGCCAGGCTGCAATGGTATTCAAGTGTGCATTGTTGATCTATTATAAGAACAGTAGAGGCCGAAATTATCGTCGGCAGGGGCAAATGCTGACTCTAGTTGAGTACCTTCTTTTGCTATACCGTGCCTTGTTGCCAACACCAGTCTGGTATCGTTTCTTTCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGGCTGTATCTAACATTTAAGCTCACATCTGTTGTTGAAAAGGTACAATCCTTCTTTGCTGCAGTGAAGGCATTGTCACGGAAAGAAGTGCATTATGGTGCTTATGCAACATCAGAGCAGGTGATTGCAGCTGGCGATCTTTGTGCTATTTGTCAAGAGAAGATGCATGCTCCGATATTACTTCGGTGCAAACACATCTTCTGTGAAGATTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCAGCAGACCTAAGTAAGAGGTTAAGTGTATCTTCTAATGACCCTGTAAGCTAG 1401 0.4654 MEQNTDMFRVPSTGGGGTGPSPSSSSLVSSSSSSLSSSNSRRFGTISPSNIINAPLSLLLEYSGILRNNNSSTTRSNFNPHEPNPNPNSEPSVNDGEVSIRIISPSEHDNHRHREEQPSSSGGGGLVVGLSHDEGVSVMPNSSTGDGGIGNENGNGDAGTGGGEGGGNGRDSSYQRYDIQHAARWVEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKVPVLIGISVAFSLHVISIYWWYQNDDLMYPLVMLPPREIPPFWHAIFIIMVNDTLVRQAAMVFKCALLIYYKNSRGRNYRRQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAYATSEQVIAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLSKRLSVSSNDPVS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90729g00014 466 MobiDBLite consensus disorder prediction 71 172 - -
Stsc90729g00014 466 CDD RING-HC_RNFT1-like 405 445 - -
Stsc90729g00014 466 ProSiteProfiles Zinc finger RING-type profile. 407 445 IPR001841 -
Stsc90729g00014 466 SUPERFAMILY RING/U-box 398 450 - -
Stsc90729g00014 466 MobiDBLite consensus disorder prediction 102 118 - -
Stsc90729g00014 466 MobiDBLite consensus disorder prediction 71 95 - -
Stsc90729g00014 466 MobiDBLite consensus disorder prediction 136 150 - -
Stsc90729g00014 466 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 32 454 IPR044235 GO:0061630|GO:1904294
Stsc90729g00014 466 SMART ring_2 407 444 IPR001841 -
Stsc90729g00014 466 MobiDBLite consensus disorder prediction 1 48 - -
Stsc90729g00014 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 456 IPR013083 -
Stsc90729g00014 466 Pfam Zinc finger, C3HC4 type (RING finger) 405 448 - -
Stsc90729g00014 466 ProSitePatterns Zinc finger RING-type signature. 422 431 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90729g00014 Stsc-Chr90729 86831 90398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90729g00014 41 453 C3H Transcription Factor Family AT5G01960 67.381 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90729g00014 - K22379 aip:107639742 721.85