Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90729g00008 ATGTTACCCCAGCTGCGTATACTCCAACTTGATAACAATCACTTCACAGGGAGCAGAGTTCCTTCTTCCTATGCAAACTTATCTAGATTAGCAAAATTAAGTCTCAGAAACTGCAGTTTGCTAGGAGAAGTACCTGATCTCAGTTCAATACCGCAGCTTTACTATTTAGATCTTAGCTGGAACAATCTTATTGGACCGATACCATCGAAAAAACTTGCAGAAAATATGACTACTATTGATCTTTCTAATAACAATCTGAATGGATCAATTCCTGGATACTTCTCAGAACTTCCTTCTCTTCAAAGACTGTCTCTTGAGAACAACTTCTTGTCAGGATCAATCTCTGCTGACATATGGCAGAAGATGAATCTCAGTACTAGTGCTAAATTTACAGTCGACCTACGTAACAACTCACTTTCAAGAATTTTGGGAGATCCAAGTCCCCCACCCAATGTCACCTTAAGGCTTGGTGGAAATCCTATATGTAAGGGTTCCGGAGCTAGGGAAATATTGGCCAAACAATGTGGATTTGGAGGAGAAGAAGCAGACAATTACTTAACAAATTCAACAACTACATGTCCTCCTCAAGCTTGTTCAGTCAATGATTTCTTTGAATATGTTCCAGATTCACCTATTCCTTGCTTTTGTGCATCTCCTCTTAAAATTGGATACCGGCTGAAAAGCCCGAGTTTTTCTTTCTTCCCTCCATACGAAGCTTCATTTAGATCATATGTTACCCATGCTTTGAACTTGGGCTTCTATCAACTATCAATAGATTCATATTCTTGGGAAAAAGAACAAACTCGTCTTAGGATGTATCTGAAACTTTATCCTGTGGCTAGTTATTCACACAATGAGTTCAATGCAACTGAGGTCTATCGCATGCGAAGCATATTCTCGTCGTGGAATTTCGGTGGAAGTGATTTTTATGGGCCATATGAGCTTCTGAATTTCACCCTTGAGGGACCTTATGCATATTTAATTACAAAATCAGAAAAGAGCAAAAGTAGTACAATGGAAATAATTTTTGCTGTGGTAGCAGCTGTGGCTGTTGTTGTAGCAATCTCTGCATTAGTAGCTCTCATACTTGTAAGAAGAGATATCAAAAACCAACACATGTTTTCTAGAAGACGTCCATCATCTAGTGTTCCTATCAAAATAGATGGTGTAAAAGAATTCACTTTCAAAGAAATGGTTCGCGCCACTGATAGTTTCAGCAGTTCAAATCAAGTAGGCCGAGGAGGATATGGAACGGTTTATAAAGGCACTCTACCTGATGAAACAATTGTCGCCATAAAGCGAGCACAAGAAGATTCCCTACAAGGAACAAAAGAATTTTTGAATGAGATTGAACTATTATCAAGGTTACATCATCGAAATCTAGTCTCGTTGATCGGATATTGTGATGAAGAAGGGGAGCAGATGCTTGTTTATGAATTTATGTCTAATGGCAACTTGAGGGATTGGCTTTCAGGCACAAAAGGAAACTTAGCCTTTGGTATGAGATTGCGCATTGCAATCCATTCGGCCAAAGGAATACTATATCTGCATACTGAGGCTAATCCTCCGATATTCCATCGAGATATCAAAGCAAGTAACATACTCCTAGACTCCAAGATCATTGCTAAAGTCGCAGATTTTGGACTGTCGCGGCTTGCACCGCACCTAGATGAAGGGAATGAACCTAAATATGTGTCAACAGTTGTGAAGGGAACACCAGGTTACCTGGATCCAGAGTACTTGTTGACTCATAAATTGACAGATAAGAGTGATGTTTATAGTCTCGGAGTAGTGTTTATGGAGCTTTTGACAGGAATGCAGCCAATATCTCATGGGAAGAACATCGTTCGCGAGGTACTTGTTTATTGCATAACCATCTTTGGCGGCTAA 1890 0.3968 MLPQLRILQLDNNHFTGSRVPSSYANLSRLAKLSLRNCSLLGEVPDLSSIPQLYYLDLSWNNLIGPIPSKKLAENMTTIDLSNNNLNGSIPGYFSELPSLQRLSLENNFLSGSISADIWQKMNLSTSAKFTVDLRNNSLSRILGDPSPPPNVTLRLGGNPICKGSGAREILAKQCGFGGEEADNYLTNSTTTCPPQACSVNDFFEYVPDSPIPCFCASPLKIGYRLKSPSFSFFPPYEASFRSYVTHALNLGFYQLSIDSYSWEKEQTRLRMYLKLYPVASYSHNEFNATEVYRMRSIFSSWNFGGSDFYGPYELLNFTLEGPYAYLITKSEKSKSSTMEIIFAVVAAVAVVVAISALVALILVRRDIKNQHMFSRRRPSSSVPIKIDGVKEFTFKEMVRATDSFSSSNQVGRGGYGTVYKGTLPDETIVAIKRAQEDSLQGTKEFLNEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGNLRDWLSGTKGNLAFGMRLRIAIHSAKGILYLHTEANPPIFHRDIKASNILLDSKIIAKVADFGLSRLAPHLDEGNEPKYVSTVVKGTPGYLDPEYLLTHKLTDKSDVYSLGVVFMELLTGMQPISHGKNIVREVLVYCITIFGG 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90729g00008 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Stsc90729g00008 629 ProSitePatterns Protein kinases ATP-binding region signature. 411 433 IPR017441 GO:0005524
Stsc90729g00008 629 Pfam Protein kinase domain 406 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90729g00008 629 Gene3D Transferase(Phosphotransferase) domain 1 481 623 - -
Stsc90729g00008 629 SUPERFAMILY L domain-like 2 167 - -
Stsc90729g00008 629 PANTHER RECEPTOR-LIKE PROTEIN 55 4 620 - -
Stsc90729g00008 629 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Stsc90729g00008 629 ProSiteProfiles Protein kinase domain profile. 405 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90729g00008 629 SMART serkin_6 405 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90729g00008 629 SUPERFAMILY Protein kinase-like (PK-like) 378 614 IPR011009 -
Stsc90729g00008 629 Gene3D Ribonuclease Inhibitor 1 68 IPR032675 -
Stsc90729g00008 629 Gene3D Ribonuclease Inhibitor 69 221 IPR032675 -
Stsc90729g00008 629 FunFam Leucine-rich repeat protein kinase family protein 369 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90729g00008 Stsc-Chr90729 43295 48184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90729g00008 2 619 Receptor kinase-like Gene Family AT5G01950 63.462 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc90729g00008 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90729g00008 - - gmx:100815005 795.808