Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90729g00007 ATGAACAACAACTCATTTAGTGGTCAAATTCCTCCTAATCTTTCAAACATGTCCAACCTTCTTCACCTGCTTCTGGATACAAATAATTTATCTGGCTATCTTCCCCCAGAATTCTCCATGTTACCCCAGCTGCGTATACTCCAACTTGATAACAATCACTTCACAGGGAGCAGAGTTCCTTCTTCCTATGCAAACTTATCTAGATTAGCAAAATTAAGTCTCAGAAACTGCAGTTTGCTAGGAGAAGTACCTGATCTCAGTTCAATACCGCAGCTTTACTATTTAGATCTTAGCTGGAACAATCTTATTGGACCGATACCATCGAAAAAACTTGCAGAAAATATGACTACTATTGATCTTTCTAATAACAATCTGAATGGATCAATTCCTGGATACTTCTCAGAACTTCCTTCTCTTCAAAGACTGTCTCTTGAGAACAACTTCTTGTCAGGATCAATCTCTGCTGACATATGGCAGAAGATGAATCTCAGTACTAGTGCTAAATTTACAGTCGACCTACGTAACAACTCACTTTCAAGAATTTTGGGAGATCCAAGTCCCCCACCCAATGTCACCTTAAGGCTTGGTGGAAATCCTATATGTAAGGGTTCCGGAGCTAGGGAAATATTGGCCAAACAATGTGGATTTGGAGGAGAAGAAGCAGACAATTACTTAACAAATTCAACAACTACATGTCCTCCTCAAGCTTGTTCAGTCAATGATTTCTTTGAATATGTTCCAGATTCACCTATTCCTTGCTTTTGTGCATCTCCTCTTAAAATTGGATACCGGCTGAAAAGCCCGAGTTTTTCTTTCTTCCCTCCATACGAAGCTTCATTTAGATCATATGTTACCCATGCTTTGAACTTGGGCTTCTATCAACTATCAATAGATTCATATTCTTGGGAAAAAGAACAAACTCGTCTTAGGATGTATCTGAAACTTTATCCTGTGGCTAGTTATTCACACAATGAGTTCAATGCAACTGAGGTCTATCGCATGCGAAGCATATTCTCGTCGTGGAATTTCGGTGGAAGTGATTTTTATGGGCCATATGAGCTTCTGAATTTCACCCTTGAGGGACCTTATGCATATTTAATTACAAAATCAGAAAAGAGCAAAAGTAGTACAATGGAAATAATTTTTGCTGTGGTAGCAGCTGTGGCTGTTGTTGTAGCAATCTCTGCATTAGTAGCTCTCATACTTGTAAGAAGAGATATCAAAAACCAACACATGTTTTCTAGAAGACGTCCATCATCTAGTGTTCCTATCAAAATAGATGGTGTAAAAGAATTCACTTTCAAAGAAATGGTTCGCGCCACTGATAGTTTCAGCAGTTCAAATCAAGTAGGCCGAGGAGGATATGGAACGGTTTATAAAGGCACTCTACCTGATGAAACAATTGTCGCCATAAAGCGAGCACAAGAAGATTCCCTACAAGGAACAAAAGAATTTTTGAATGAGATTGAACTATTATCAAGGTTACATCATCGAAATCTAGTCTCGTTGATCGGATATTGTGATGAAGAAGGGGAGCAGATGCTTGTTTATGAATTTATGTCTAATGGCAACTTGAGGGATTGGCTTTCAGGCACAAAAGGAAACTTAGCCTTTGGTATGAGATTGCGCATTGCAATCCATTCGGCCAAAGGAATACTATATCTGCATACTGAGGCTAATCCTCCGATATTCCATCGAGATATCAAAGCAAGTAACATACTCCTAGACTCCAAGATCATTGCTAAAGTCGCAGATTTTGGACTGTCGCGGCTTGCACCGCACCTAGATGAAGGGAATGAACCTAAATATGTGTCAACAGTTGTGAAGGGAACACCAGGTTACCTGGATCCAGAGTACTTGTTGACTCATAAATTGACAGATAAGAGTGATGTTTATAGTCTCGGAGTAGTGTTTATGGAGCTTTTGACAGGAATGCAGCCAATATCTCATGGGAAGAACATCGTTCGCGAGGTGAATATGGCTTACAATTCTGGCATGATATTTTCCATCATAGACAGTAAAATGGGTTCCTACCCCTCAGATTGTGTTGAGAGGTTCTCATCTCTGGCTCTAAGTTGTTGCCATGAAGTTACTCAGAAGAGACCATCAATGCTTGATGTTGTAAGGGAGCTCGAAAAGATCGCCGCAATGCTGCCCGGAACAGAAGCTTCTTTCTCAGATACTACTTTCCATAATGACAGTTCAGTGCAATCATCATCATCATCATCATTCATGGTGAGTAAAGACCACCAAGGATCTTCATCTGCCTCAGAAATTTGCCTTGTTAGTGGTGCCATTTCAACTATACTTCCACGTTGA 2319 0.4002 MNNNSFSGQIPPNLSNMSNLLHLLLDTNNLSGYLPPEFSMLPQLRILQLDNNHFTGSRVPSSYANLSRLAKLSLRNCSLLGEVPDLSSIPQLYYLDLSWNNLIGPIPSKKLAENMTTIDLSNNNLNGSIPGYFSELPSLQRLSLENNFLSGSISADIWQKMNLSTSAKFTVDLRNNSLSRILGDPSPPPNVTLRLGGNPICKGSGAREILAKQCGFGGEEADNYLTNSTTTCPPQACSVNDFFEYVPDSPIPCFCASPLKIGYRLKSPSFSFFPPYEASFRSYVTHALNLGFYQLSIDSYSWEKEQTRLRMYLKLYPVASYSHNEFNATEVYRMRSIFSSWNFGGSDFYGPYELLNFTLEGPYAYLITKSEKSKSSTMEIIFAVVAAVAVVVAISALVALILVRRDIKNQHMFSRRRPSSSVPIKIDGVKEFTFKEMVRATDSFSSSNQVGRGGYGTVYKGTLPDETIVAIKRAQEDSLQGTKEFLNEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGNLRDWLSGTKGNLAFGMRLRIAIHSAKGILYLHTEANPPIFHRDIKASNILLDSKIIAKVADFGLSRLAPHLDEGNEPKYVSTVVKGTPGYLDPEYLLTHKLTDKSDVYSLGVVFMELLTGMQPISHGKNIVREVNMAYNSGMIFSIIDSKMGSYPSDCVERFSSLALSCCHEVTQKRPSMLDVVRELEKIAAMLPGTEASFSDTTFHNDSSVQSSSSSSFMVSKDHQGSSSASEICLVSGAISTILPR 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90729g00007 772 Gene3D Phosphorylase Kinase; domain 1 416 519 - -
Stsc90729g00007 772 PANTHER RECEPTOR-LIKE PROTEIN 55 1 715 - -
Stsc90729g00007 772 SUPERFAMILY Protein kinase-like (PK-like) 429 747 IPR011009 -
Stsc90729g00007 772 ProSitePatterns Protein kinases ATP-binding region signature. 450 472 IPR017441 GO:0005524
Stsc90729g00007 772 Gene3D Transferase(Phosphotransferase) domain 1 520 729 - -
Stsc90729g00007 772 Pfam Protein kinase domain 445 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90729g00007 772 SUPERFAMILY L domain-like 2 206 - -
Stsc90729g00007 772 FunFam Leucine-rich repeat protein kinase family protein 408 519 - -
Stsc90729g00007 772 Pfam Leucine rich repeat 90 147 IPR001611 GO:0005515
Stsc90729g00007 772 ProSiteProfiles Protein kinase domain profile. 444 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90729g00007 772 Gene3D Ribonuclease Inhibitor 1 195 IPR032675 -
Stsc90729g00007 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 563 575 IPR008271 GO:0004672|GO:0006468
Stsc90729g00007 772 SMART serkin_6 444 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90729g00007 772 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 520 727 - -
Stsc90729g00007 772 CDD STKc_IRAK 450 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90729g00007 Stsc-Chr90729 42675 48184 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90729g00007 1 723 Receptor kinase-like Gene Family AT5G01950 61.096 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc90729g00007 Pkinase 8.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90729g00007 - - tcc:18602181 949.888