Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90729g00005 ATGATTATTGATACTGTGATGCCGGCTCTGAGAAGAAGACATGGATATACCTTGGCTGTTTTGTTCTGTTTATTCATCTCCATGGCAGCTTCACAGCCAACAGATCCTTCAGAAATAAATGCACTGAAAGGGATCAAGAAAAGTTTGATTGATCCCATGAACAAACTAAAGGACTGGAATAAGGGTGATCCCTGTGGATCAAACTGGACTGGAGTTTGGTGTTATGATAATGTTGGGGATGACGGTTACTTCCATGTCCGCGAGTTGTACTTGATGACTGCGAATCTTTCGGGAACTCTAGCACCTGAACTCGGTCAGCTATCTCAACTGGAAATCCTGGATATCATGTGGAATAAGCTGACAGGCACAATACCAAAGGAGATTGGGAGTATTGCAACACTGAAACTCTTGCTTCTGAATGGCAATAATTTATCGGGTAGCTTACCGAACGAGCTCGGCAACCTTACAAGATTAAACAGGCTCCAAGTCGACGAAAATCAATTTTCGGGTCCAATCCCAGTGTCATTTTCCAACATGATCAATGTTAAACACCTCCACATGAATAACAACTCATTTAGTGGTCAACTTCCACCGGAACTTTCGAAGCTGCCAAATCTTATACACCTGCTTGTGGACAACAACAACTTATCTGGTTATCTTCCGCCGGAATACTCCATGCTCCAAGGGTTGCGAATACTCCAACTTGATAACAATAATTTCAGTGGGAATGGAATTCCTTCTACCTATGCAAACTTGTCCAAGCTAGTAAAACTGAGTCTGAGAAACTGCAATCTGCAAGGAACTGTTCCTGATTTCAGCCCAATAGCAAATCTTAGCTATTTAGATCTTAGCTGGAATCATCTTACTGGACCCTTGCCAACCAATAAACTTTCTGACAATATGACAACCATAAATCTGGCCAATAACAAGCTCAATGGATCTATTCCTCAAAACTTCTCAAATCTGCCTCTTCTTCAGGAACTGTTACTTCAGAACAATTTGTTCTCTGGATCAATCCCTGCTGGCATATGGCAGAACATGTCCTTTACCACAAGTGCTAAACTTAAAATTGATCTCAGTAACAACTCCCTTTCAGACATTCTTGGAAATTCAACTACCCCGGCAAACGTTACCTTGAGGCTTTCTGGAAATCCTATCTGCAAGAATTCTAACATTCATAATATTGTTCAATATTGTGAACATGAAGGAGAAGAAGCAACCATAGCCTTGCAGTCAAAACTCAAATGTCCACCTCAAGCTTGTCCAACAGATACTTTCTTCGAATATGTACCTTCTTCCCCACTTCCTTGCTTTTGTGCAGCACCTTTGAAAATTGGCTACAGATTGAAAAGTCCAAGCTTTTCTTACTTTCCTCCCTATATTACACCTTTTGAGTCATATATAACTGATTCCTTAGACTTAGACCTCTATCAGTTATCGATTGCTTCTTATGCTTGGGAAGAGGGACCTCGTCTTAGAATGTACTTGAAAATCTTCCCTTCATACAAACAAAATGGTTCCCATGTGTTCAATGTGAGTGAGGTCCGTCGCATTACAGGCGTATTTACATCATGGAAATTTCCTCGCACCGATTTTTTTGGACCATATGAACTCATGAACTTAAATCTTGATGGACCTTATGCGAATCTTTTCAATGGTTCCGGATCAGGGAAGAGTAAAACTAAAACCGGCGTATTAGTTGCTGCTATTGTAGCAGGTGTTGCTTGTGTTTTGGCAATATCTGCATTGATCTATCTCCTGATCACTAGAAAACATATCAAATACCAGAGCAAGCTGTCGAGGAAGCGAGTTTCCACAAATATATCCATCAAAATAGATGGTGTCAAAGCATTTACTTTCAAAGAATTATCTCATGCTACCGACAAATTTGACAGCACGACTAAAGTTGGCGAAGGAGGTTACGGGAATGTGTACAAGGGAATTTTATCTGATGAAACATTTGTAGCCATAAAGCGAGCCGAAGAAGGTTCCTTACAAGGTCAGAAAGAGTTTTTGACAGAGATTGAGCTCTTATCAAGGATACATCATCGAAATCTTGTCCAGTTGATTGGATACTGTAATGAAGAAGGGGAGCAGATGCTAGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATCTCTGCAGGTAAAAAGAGGAGGGGATGCCTGAGTTTTGTTATGAGGCTGAGAATTGCAATGGGTGCTGCTAAAGGGATACTTTATCTGCATACAGAGGCCAACCCTCCTATATTCCACAGAGATATCAAAGCAAGTAACATACTTTTGGACTCTAAGTTCACTGCTAAAGTGGCCGATTTCGGTCTGTCACGGCTTGCGCCATTCCTTGAGGAAGAAGGAACTGTCCCTAGATATGTGTCGACTGTTGTGAAGGGAACACCAGGTTATCTGGATCCCGAATACTTGTTGACACATAAATTGACTGACAAATGTGATGTCTATAGCCTTGGGATAGTTAATATGGCTCGCCAATCTGGTACAATAGATTCCATCATAGACAGCAACATGGGAGGGTACTATCCATCAGATTGTGTAGACAAGTTCCTAAGTCTTGCTCTAAGTTGCTGCCATGACAATCCAGAGCAGAGGCCATCAATGTTGGATGTGGTTAGGGAACTTGAAGACATCATGGGAATGCTGCCAGAGACTGAGACAAGTTTCTCAATCTCAGACATAACCTCTGATAGTTCTGGCAAAATGGCAAAATCTTCATCATCAGCTTCAGCTTCAACATCAAATGTAATTAGGGAGGAACTACACATGTCTTCTTATGTTTCAGGAAGTGACCTTGTCAGTGGTGTGGTTCCCACCATTGTTCCCCGGTGA 2850 0.4154 MIIDTVMPALRRRHGYTLAVLFCLFISMAASQPTDPSEINALKGIKKSLIDPMNKLKDWNKGDPCGSNWTGVWCYDNVGDDGYFHVRELYLMTANLSGTLAPELGQLSQLEILDIMWNKLTGTIPKEIGSIATLKLLLLNGNNLSGSLPNELGNLTRLNRLQVDENQFSGPIPVSFSNMINVKHLHMNNNSFSGQLPPELSKLPNLIHLLVDNNNLSGYLPPEYSMLQGLRILQLDNNNFSGNGIPSTYANLSKLVKLSLRNCNLQGTVPDFSPIANLSYLDLSWNHLTGPLPTNKLSDNMTTINLANNKLNGSIPQNFSNLPLLQELLLQNNLFSGSIPAGIWQNMSFTTSAKLKIDLSNNSLSDILGNSTTPANVTLRLSGNPICKNSNIHNIVQYCEHEGEEATIALQSKLKCPPQACPTDTFFEYVPSSPLPCFCAAPLKIGYRLKSPSFSYFPPYITPFESYITDSLDLDLYQLSIASYAWEEGPRLRMYLKIFPSYKQNGSHVFNVSEVRRITGVFTSWKFPRTDFFGPYELMNLNLDGPYANLFNGSGSGKSKTKTGVLVAAIVAGVACVLAISALIYLLITRKHIKYQSKLSRKRVSTNISIKIDGVKAFTFKELSHATDKFDSTTKVGEGGYGNVYKGILSDETFVAIKRAEEGSLQGQKEFLTEIELLSRIHHRNLVQLIGYCNEEGEQMLVYEFMPNGTLRDWISAGKKRRGCLSFVMRLRIAMGAAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLAPFLEEEGTVPRYVSTVVKGTPGYLDPEYLLTHKLTDKCDVYSLGIVNMARQSGTIDSIIDSNMGGYYPSDCVDKFLSLALSCCHDNPEQRPSMLDVVRELEDIMGMLPETETSFSISDITSDSSGKMAKSSSSASASTSNVIREELHMSSYVSGSDLVSGVVPTIVPR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90729g00005 949 Gene3D Ribonuclease Inhibitor 36 199 IPR032675 -
Stsc90729g00005 949 ProSiteProfiles Protein kinase domain profile. 630 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90729g00005 949 FunFam Leucine-rich repeat protein kinase family protein 594 705 - -
Stsc90729g00005 949 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Stsc90729g00005 949 PANTHER RECEPTOR-LIKE PROTEIN 55 45 884 - -
Stsc90729g00005 949 Gene3D Ribonuclease Inhibitor 201 271 IPR032675 -
Stsc90729g00005 949 Gene3D Transferase(Phosphotransferase) domain 1 706 896 - -
Stsc90729g00005 949 SUPERFAMILY Protein kinase-like (PK-like) 612 881 IPR011009 -
Stsc90729g00005 949 Gene3D Phosphorylase Kinase; domain 1 601 705 - -
Stsc90729g00005 949 Pfam Protein kinase domain 632 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90729g00005 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 752 764 IPR008271 GO:0004672|GO:0006468
Stsc90729g00005 949 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 36 197 - -
Stsc90729g00005 949 SMART serkin_6 630 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90729g00005 949 Gene3D Ribonuclease Inhibitor 272 422 IPR032675 -
Stsc90729g00005 949 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524
Stsc90729g00005 949 SUPERFAMILY L domain-like 51 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90729g00005 Stsc-Chr90729 29420 35362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90729g00005 11 949 Receptor kinase-like Gene Family AT5G01950 58.282 0.0 1056
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc90729g00005 Pkinase 1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90729g00005 - - gmx:100815005 1345.87