Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90728g00015 ATGGGACACAGCTCCAAGAAGAAGAAGCGCGGCGGCGGTGGTGGCAGGAGCAAGGGAAGAGCTCCTTCCAAAGATCACACTTCTCAATCCGCCAACGATGATACTGAACTGTCCGAAGAGATCACAGCTCTATGTGCTATTTTCCAAGAAGATTGTAAGGTCCTTCCTGGCTCACCTCCTCAAATAAGTATCAAGCTCAGTCCTTACTCTAAGGACATGGGTTATGAAGACTTGGATGTTTCGGCAATTCTTCACGTCAGATGCTTACCCGGGTATCCCTTCAAGTGTCCCAAGCTGCAGATTACTCCTGAGGATGGCTTATCCGAGAGTGACGCTGATAAACTATTGTCACTCCTTCACGATCAGGCTACTTTGAATGCTAGGGAGGGTCGAGTAATGATCTTTAACTTGGTTGAGGCTGCTCAAGAATTTCTGTCGGGAATTGAGCCAATTGCAAAACCAACTGAATCTAAGCTTTTGCACTCAACTGAGGAAAGCAATGAAGAATTGTTTCCCAAGGATATGGCATTGTCAGACAAAAATATATTTTATGATTATCTTCTTATAGACCTGTTCAGTGATTATGGAGAGTCATGGGATTGGGGTATTGGAATGGATGTAACTGCTGAAAAAAGTTCTTCTCTTCCTCCGTCTAAGTTAGAAGCCTCAAAACATGATTCTGAGACCCGTGAAAAGAAATCTGATAGTAAGGAAAAACCATTAATTAAACAAGAAATTCTTACCAAATTAGATACAGTTGGAGAAGTTAGTGAAGACGGCAACAAGGACACATCCTCGACTAGTTCGAGTAGAAATCTGGTGGAAGATCCTGTGGGGAATGACAATGAAAGTGAGAAAGAGGATTTTGTCTTTGCTGAGTATACACCACAAGATGATGAACAAATGTATGAAAGTATGTCCTCAGAATCTCTGTCTTCAGCCTCAACTCACCATCAAACATCTGAAACAGTTGAAAAGGATCTTATAATGGTTGCCTTGCTTCGTCTAGGTGCTTCTAAAGGAATACCGGTTGACTTTTTGCCGCAACTAGCACAAGGGCTATACAACTTTATTGAAAAATTCTATGATTGGGCTCGTGACATGGCATCTAAACTGCCTTCCCTTTTCAACAAACCATTTGATAGTGTTTTTCAGAAACATTTGGCTTCACCCACTTCTAATCTTGGTGGTTCAAATACAATTCCTAATAGTTCTCGATATCTGAATGATTTTGAGGAGCTACAACCTCTTGGACATGGTGGTTTTGGCCATGTGATGCTTTGCAAAAATAAGCTTGATGGAAGGCAGTATGCTGTGAAGAAGATTCGCCTTAGGGACAAAACCATGCCTGAAAGAATATTAAGAGAAGTAGCCACACTCTCTCGTTTGCAGCATCAGCACATTGTTAGGTATTATCAGGCATGGTTTGAAACTGGAGTTGCGAACTCTGAAAATGATGTGGCTTGGAGTTCAAGGACTACACTAAGCACTTCTTTAAGTTTTACCTATAAAGCTGCAAGCTCCAATAATGCTCTTGGGCATGAAAATCAGCTTGAATCGACGCACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTTCGCCAGGAGTTTGAATCGTATAATTTCGACAAAGAGATGGCATGGCATTTGTTTCGTCAAATAGTGGAAGGTTTGGCACATATACATGGACAAGGAATAATTCATCGGGATTTGACACCGAATAACATATTCTTTGATGCTTGCAATGATATTAAAATTGGTGATTTTGGTCTTG 1777 0.4125 MGHSSKKKKRGGGGGRSKGRAPSKDHTSQSANDDTELSEEITALCAIFQEDCKVLPGSPPQISIKLSPYSKDMGYEDLDVSAILHVRCLPGYPFKCPKLQITPEDGLSESDADKLLSLLHDQATLNAREGRVMIFNLVEAAQEFLSGIEPIAKPTESKLLHSTEESNEELFPKDMALSDKNIFYDYLLIDLFSDYGESWDWGIGMDVTAEKSSSLPPSKLEASKHDSETREKKSDSKEKPLIKQEILTKLDTVGEVSEDGNKDTSSTSSSRNLVEDPVGNDNESEKEDFVFAEYTPQDDEQMYESMSSESLSSASTHHQTSETVEKDLIMVALLRLGASKGIPVDFLPQLAQGLYNFIEKFYDWARDMASKLPSLFNKPFDSVFQKHLASPTSNLGGSNTIPNSSRYLNDFEELQPLGHGGFGHVMLCKNKLDGRQYAVKKIRLRDKTMPERILREVATLSRLQHQHIVRYYQAWFETGVANSENDVAWSSRTTLSTSLSFTYKAASSNNALGHENQLESTHLYIQMEYCPRTLRQEFESYNFDKEMAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDACNDIKIGDFGL 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90728g00015 592 MobiDBLite consensus disorder prediction 1 15 - -
Stsc90728g00015 592 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 59 592 - -
Stsc90728g00015 592 Gene3D Phosphorylase Kinase; domain 1 399 524 - -
Stsc90728g00015 592 Gene3D Transferase(Phosphotransferase) domain 1 525 592 - -
Stsc90728g00015 592 SUPERFAMILY UBC-like 35 145 IPR016135 -
Stsc90728g00015 592 MobiDBLite consensus disorder prediction 259 277 - -
Stsc90728g00015 592 ProSiteProfiles RWD domain profile. 39 148 IPR006575 GO:0005515
Stsc90728g00015 592 Pfam RWD domain 36 145 IPR006575 GO:0005515
Stsc90728g00015 592 SUPERFAMILY Protein kinase-like (PK-like) 398 592 IPR011009 -
Stsc90728g00015 592 MobiDBLite consensus disorder prediction 1 36 - -
Stsc90728g00015 592 FunFam eIF-2-alpha kinase GCN2 27 155 - -
Stsc90728g00015 592 FunFam eIF-2-alpha kinase GCN2 399 529 - -
Stsc90728g00015 592 Gene3D Ubiquitin Conjugating Enzyme 26 154 IPR016135 -
Stsc90728g00015 592 SMART serkin_6 411 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90728g00015 592 MobiDBLite consensus disorder prediction 19 33 - -
Stsc90728g00015 592 ProSiteProfiles Protein kinase domain profile. 411 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90728g00015 592 MobiDBLite consensus disorder prediction 221 245 - -
Stsc90728g00015 592 ProSitePatterns Tyrosine protein kinases specific active-site signature. 567 579 IPR008266 GO:0004672|GO:0006468
Stsc90728g00015 592 SMART RWD2001b 39 148 IPR006575 GO:0005515
Stsc90728g00015 592 MobiDBLite consensus disorder prediction 210 288 - -
Stsc90728g00015 592 Pfam Protein kinase domain 411 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90728g00015 592 ProSitePatterns Protein kinases ATP-binding region signature. 417 441 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90728g00015 Stsc-Chr90728 105618 111393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90728g00015 408 592 Core Cell Cycle Gene Families AT3G48750 26.178 4.38e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Stsc90728g00015 Pkinase 6.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90728g00015 K16196 - gmx:100797996 814.298