Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90728g00010 ATGTTTCCGAAACAGTCTGGCCAAGATGGCCCTGTTTCTGGTCCCGTGCGAACTAGTGATAGGATCAGGACAAGGCCAAACATGTATGGCCGACCATTCATGTATTATACCTCAAATCTTAGGCGGCGCAAGAAAAGCAAGAATAAGGCTAGGACAGAAGCTTCACGGATTGCCAAGATGCTGCGTCCAGGGAGCCGGAAGACACAGGATTCACATGCTAATTCTGGATCTAGTAACCTTCGACGTTCAACAAGAAAGAGAAGGCTTAATGTAAATCTCGAAGGTTTTGCAACAGACAGCTCTGGAGCTGAGGATGAAGACTTAATGCGGCCTAAATATCGACATATGAGAAACCGGATTAACAATAGCATCAGCCAAGAAGAGTTGATGTCTAAACACAAAAGAGCAGTGCCTACTAAATCAACACCTAGACGTGAAGGTCTACGACCTCGTCGTTCTAAGGCTGTGGCAAGAGAGCAAGCAATTTCACAATCAGACGACGAGCAAGACTTTTCAGAAGCCAAGGCAGAACAGGATGAAACAGAAAATGGAAATGATGGTGAAGAAAATGATGCAGATGATGGTCAGAATGATATTGAAGGGGATGCTGAGGCTGAAGATGAAGGTGAGGATGATGAAGATGGTGACGATGAAGAGGGTGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAGCAGGATGGAAGAAGGCGTTATGATCTTAGAAATCGTTCTGATGTCCGTAGGTTTTCTATGGAAGAGGGGAAAGCCCGACCAAGATCCCCTCGAAGAGTGTTACATCAAGGTATGGGAAATAAAGTCAGCAGGGATGTTAGGAAGGGTGGATCACGAGTTCACAAGCGGCATCGCCTAGCAAGGCCTGAAGACTCTGATGACTCCCTTCTTGTTGATGAGCTGGACCAAGGGCCTGCCATTCCTTGGGGTCGAGGTGGCAACAGATCTGGTGCCCCCTGGCTCTTTGGGGGCTTAGATACACATGGAACAACAGCATGGGGATTAAACCTTGCTGCATCAGGCTGGGCCCATCAGAGTGATGCTTTGGCTACCTTGACAACTGGGATTCAAACTGCTGGACCTAGCTCTAAGGGAGGGGCAGATATCCAGCCCTTGCAAGTTGATGATACTGTGAGTTTTGAGGATATAGGTGGGCTGTCTGAATACATTGATGCTCTTAAAGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTCTTTGCTAGTTACCATATTACTCCTCCTAGGGGGGTGTTGCTATGTGGTCCCCCGGGAACTGGGAAAACATTAATTGCAAGAGCATTGGCTTGTGCTGCTTCAAAAGCTGGCCAGAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGTTAAGCAAGTGGGTTGGTGAGGCTGAGAGACAATTGAAGCTACTCTTTGAAGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAAGAGCAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTAGTTTTAATTGGAGCTACCAACAGAATTGACGCTATTGATGGAGCTTTGCGGCGCCCTGGTAGATTTGATCGTGAATTTAATTTTCCTTTGCCTGGGTGTGAGGCACGTGCTGAAATATTAGAGATTCATACTCGTAAGTGGAAGCATCCACCTTCAAAGGATCTGAAAAAAGAACTTGCAGCTAGTTGTGTAGGTTATTGCGGTGCTGATCTAAAGGCTCTATGTACCGAAGCTGCCATTCGTGCTTTCCGTGAAAAATACCCACAGGTTTATACAAGTGATGACAAATTTCTTATAGATGTGGATTCGGTCAAGGTAGAAAAGTATCATTTTATTGACGCAATGTCTACAATCACTCCTGCTGCTCATAGGGGAGCTATTGTGCACTCTAGGCCATTGTCTCTTGTAGTTCAACCATGTCTTAAGAGACATCTAGAAACAGCCATGGTTATTATATCTGATATTTTCCCCCCAGTATCAGTTGCATCAGAACTGACCAAATTTTCAATGCTTTCCTATGGGTCTGCAATTCCACTTGTTTATCGGCCTAGGCTTCTACTTTGTGGTGGGGAAGGTACTGGACTGGATCATCTTGGGCCAGCAGTTTTACATGAACTGGAAAAATTTCCTGTACATTCATTAGGACTTCCATCTCTGCTGTCAGATCCTAGTGCAAAGACGCCAGAGGAGGCATTGGTACACATATTTGGTGAAGCTAGAAGAACCACACCATCAATTCTCTATTTACCACAATTTGATGTTTGGTGGGAAACTGCTCATGAACAACTCAGAGCTGTTCTCCTGACTTTGCTAGAAGAATTGCCATCTGACATGCCTATCCTTCTACTGGGAACATCCTCAGTTGTGCTAGCTGAAGTTGAAGATGTACCTCCTTCAGTTTTCCCGCATCGTTCAGTCTATGAAGCACCAAAGTTGGCCACTGGTCCTAAGGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCGCTTCGCAGATTGCGTATGTGCCTTAGAGATGTTTGCAATCGGATATTGTATGACAAACGATTTAATGCCTTCCATTATCCAGTCTCGGATGAAGATGCACCTAATTATCGGTCAATTATACAAAACCCAATGGATATGGCTACTGTGTTGCAACATGTTGATAATGGTCATTATATCACATGTGACGCATTCCTGCAGGATATTGATCTTATTGTTTCCAATGCAAAGGCTTACAACGGACAGGACTACAATGGCGCTAGGATTGTCAGTAGAGCCTGCGAGCTGCGTGATGCGGTGCAAGGGATGATCTCACAGATGGATCCAGCACTGGTTGCATACTGTGACAAGATTGCTAGCCAAGGAGGTCCAGCTCAGTTGCCTGATGAATTAGGGGTATCCACATTCCCTGCAACTCCTGTTGTACAGCTGAGTGCTGCTACTAGAACAAGTGCTCGACTTCGTCATGTCCAACCGGAGGTTAATGTGGATCAGAGTTATGAAGCATTGAAGCGAACAAAGAAGACAGTTGATATTGCGCAACCAGTGGTAGAGGAGAAGTCACAAGAAGATTCTTTACCGCCAAAGCCTCCCCAGGAGCATCAGACAAATGACATGGATACTGAAAGGGTAGAACCTGTGATGATCGACGGAAATTCACATGGAACTTCTATGAGTAGCCATGCTGATGGGGGCGTAAGTCTTGAAGATGTCACGATGGTGGATGGTGAATTTTCAGGACAAGTGGAGTCTCTGAAGGAACAATTTGTTAAGCGCAGTGAAAATTGCAGTGTTCCACAACTTGAAAGGCTTTACACAAGGATTATGAAGGGTGTGTTTGAAACCATAGATAAAGGTGATGATATTAAGGCTTCGGTTTTGAAGTTTTTGTTGAAATTTGTAGAGGATGATGCAAATTTCTGA 3507 0.4463 MFPKQSGQDGPVSGPVRTSDRIRTRPNMYGRPFMYYTSNLRRRKKSKNKARTEASRIAKMLRPGSRKTQDSHANSGSSNLRRSTRKRRLNVNLEGFATDSSGAEDEDLMRPKYRHMRNRINNSISQEELMSKHKRAVPTKSTPRREGLRPRRSKAVAREQAISQSDDEQDFSEAKAEQDETENGNDGEENDADDGQNDIEGDAEAEDEGEDDEDGDDEEGEEEEEEEEEEEEEEEQDGRRRYDLRNRSDVRRFSMEEGKARPRSPRRVLHQGMGNKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGNRSGAPWLFGGLDTHGTTAWGLNLAASGWAHQSDALATLTTGIQTAGPSSKGGADIQPLQVDDTVSFEDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILEIHTRKWKHPPSKDLKKELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVKVEKYHFIDAMSTITPAAHRGAIVHSRPLSLVVQPCLKRHLETAMVIISDIFPPVSVASELTKFSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDMPILLLGTSSVVLAEVEDVPPSVFPHRSVYEAPKLATGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPMDMATVLQHVDNGHYITCDAFLQDIDLIVSNAKAYNGQDYNGARIVSRACELRDAVQGMISQMDPALVAYCDKIASQGGPAQLPDELGVSTFPATPVVQLSAATRTSARLRHVQPEVNVDQSYEALKRTKKTVDIAQPVVEEKSQEDSLPPKPPQEHQTNDMDTERVEPVMIDGNSHGTSMSSHADGGVSLEDVTMVDGEFSGQVESLKEQFVKRSENCSVPQLERLYTRIMKGVFETIDKGDDIKASVLKFLLKFVEDDANF 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90728g00010 1168 Pfam Bromodomain 876 944 IPR001487 GO:0005515
Stsc90728g00010 1168 Gene3D - 855 983 IPR036427 GO:0005515
Stsc90728g00010 1168 CDD Bromo_AAA 863 973 - -
Stsc90728g00010 1168 PANTHER AAA DOMAIN-CONTAINING 1048 1147 IPR045199 -
Stsc90728g00010 1168 SMART bromo_6 863 970 IPR001487 GO:0005515
Stsc90728g00010 1168 ProSitePatterns AAA-protein family signature. 531 549 IPR003960 GO:0005524|GO:0016887
Stsc90728g00010 1168 FunFam ATPase family AAA domain-containing protein 2B 562 647 - -
Stsc90728g00010 1168 MobiDBLite consensus disorder prediction 182 236 - -
Stsc90728g00010 1168 Gene3D - 562 647 - -
Stsc90728g00010 1168 FunFam ATPase family, AAA domain-containing 2 384 567 - -
Stsc90728g00010 1168 Gene3D - 701 824 IPR027417 -
Stsc90728g00010 1168 SUPERFAMILY Bromodomain 861 975 IPR036427 GO:0005515
Stsc90728g00010 1168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 651 IPR027417 -
Stsc90728g00010 1168 FunFam ATPase family AAA domain-containing protein 855 983 - -
Stsc90728g00010 1168 MobiDBLite consensus disorder prediction 128 181 - -
Stsc90728g00010 1168 MobiDBLite consensus disorder prediction 1 299 - -
Stsc90728g00010 1168 PRINTS Bromodomain signature 929 948 IPR001487 GO:0005515
Stsc90728g00010 1168 PRINTS Bromodomain signature 895 911 IPR001487 GO:0005515
Stsc90728g00010 1168 PRINTS Bromodomain signature 911 929 IPR001487 GO:0005515
Stsc90728g00010 1168 Pfam ATPase family associated with various cellular activities (AAA) 426 561 IPR003959 GO:0005524|GO:0016887
Stsc90728g00010 1168 Coils Coil 215 241 - -
Stsc90728g00010 1168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 832 IPR027417 -
Stsc90728g00010 1168 ProSiteProfiles Bromodomain profile. 886 948 IPR001487 GO:0005515
Stsc90728g00010 1168 MobiDBLite consensus disorder prediction 1045 1071 - -
Stsc90728g00010 1168 MobiDBLite consensus disorder prediction 237 264 - -
Stsc90728g00010 1168 SMART AAA_5 422 563 IPR003593 GO:0016887
Stsc90728g00010 1168 Pfam AAA+ lid domain 588 625 IPR041569 -
Stsc90728g00010 1168 Gene3D - 384 654 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90728g00010 Stsc-Chr90728 64841 70742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90728g00010 372 626 Calmodulin-binding Proteins AT3G56690 36.680 1.42e-41 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90728g00010 K22531 - gmx:100787765 1852.03