Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90728g00006 ATGGGAAGCTGCATTTCAACGAACGGGAAGAATGCTCCACGTAGCCGAAGATCCAGAAGGGCTTCAACTCCAAGGAGCCACGTCAGCAACAATAACCACCACGGAAAGGAGTGCTACGAGCCATCAACGCCGCAAAAGTCATCGGCGGTGAACGTTCGCGCCATCAATGTGGTGACAAACCCTACGCCGGGGAATATTTTTGATCGGTACCAGTTCGGAAAGGAGCTTGGAAGAGGCGAATTCGGTGTGACTCATCGGTGCGTGGATCTGAAAACTGGTGAGGCGTTCGCGTGCAAGAAGATTGCGAAGTCGAAGCTGAGAACGGAGATTGATGTGCAAGATGTGAGGAGGGAGGTGCAGATCATGAGGCACTTGCCGAACCACCCTAACATTGTGTCGTTCAGGGAGGCGTATGAGGACAAAGATGCCGTCTACCTTGTCATGGAGTTGTGCCAAGGCGGCGAGCTTTTCGATAGGATCGTCGCCAAAGGCCATTATACCGAGCGCGCTGCTGCTAATGTTACCAAGACCATTCTTGAAGTCTGCAAGGTATGCCATGAACATGGAGTAATCCACAGGGACTTGAAACCAGAAAATTTCTTGTTTGCAGATGCAAGTGAGAGCTCCCAATTGAAGGCTATTGATTTTGGCCTTTCCACATTTTATACACCTGGCCAAAGATTCAATGAAATCGTTGGAAGCCCCTATTACATGGCTCCAGAGGTTCTAAGACGTAACTATGGAAATGAAGTCGATATATGGAGCACTGGCGTCATTCTCTATATTTTGCTTTGTGGAGTTCCTCCCTTCTGGGCAGAAACTGAGGAAGGAATTGCACAAGCAATCATCAGGGGTCATTTGGACCTCACAAGAGATCCTTGGCCTAAAGTTTCAGATGAAGCAAAACACCTAGTTAAGCGTATGCTTGATCCAAATCCACAAACCAGGATAACAGTTCAAGAAGTCCTTGACCATTCGTGGATACAACATAGGGAGCATGGTAGAACTGTTTCCCTTGGAGACCAAGTGAGAAATAGGATCAAACAATTCTCCTTAATGAATAGATTCAAGAAGAAGGTTCTTAGAGTGGTGGCTGATAACCTTCCTAATGAGCAACTTGATAGCATGACCAAAATGTTCCATATGATGGACAAGGACAAGAATGGAGATTTGTCATTTGAGGAGCTCAAAGATGGCCTTGCAATGTTTGGTCACACACTTCCTGATCTTGATGTCAAGATGCTGATGGATGCTGTGAGTTCTCTATACAAGATTTCTGTTTCTTTCAGGTTTCATCTGGGAATCTATATACAACAACTTGTTTTTGTTGATGAGAAACAGGCAGATGTTGATGGAAATGGCACCCTGAACCGTGAGGAGTTTATCACGATGAGTGTTTTCCTGAGGAGGATTGGAAGCGAAGAGACTCTAACTGATGCATTCCGTTACTTCGACAAGAATATGACCGGATTCATTGAGTTTGAGGAGTTGAAAGAAGCTTTATCAGCTGATGATGAACACACTGATGAGCAAGTGATCACAGACATCCTCAATGATGTCGACCTAGACAAGGACGGCCGAATCAGTTTCGAGGAGTTCAAGACAATGATGAAGTCAGGAGCAGATTGGAAGATGTCATCTCGCCAGTATTCAAGAGCAATGCTAAATGCGTTGAGCTTCAGGCTCTTCAAGGACAAATCCGTGAGGGTAAATAACTAA 1719 0.4555 MGSCISTNGKNAPRSRRSRRASTPRSHVSNNNHHGKECYEPSTPQKSSAVNVRAINVVTNPTPGNIFDRYQFGKELGRGEFGVTHRCVDLKTGEAFACKKIAKSKLRTEIDVQDVRREVQIMRHLPNHPNIVSFREAYEDKDAVYLVMELCQGGELFDRIVAKGHYTERAAANVTKTILEVCKVCHEHGVIHRDLKPENFLFADASESSQLKAIDFGLSTFYTPGQRFNEIVGSPYYMAPEVLRRNYGNEVDIWSTGVILYILLCGVPPFWAETEEGIAQAIIRGHLDLTRDPWPKVSDEAKHLVKRMLDPNPQTRITVQEVLDHSWIQHREHGRTVSLGDQVRNRIKQFSLMNRFKKKVLRVVADNLPNEQLDSMTKMFHMMDKDKNGDLSFEELKDGLAMFGHTLPDLDVKMLMDAVSSLYKISVSFRFHLGIYIQQLVFVDEKQADVDGNGTLNREEFITMSVFLRRIGSEETLTDAFRYFDKNMTGFIEFEELKEALSADDEHTDEQVITDILNDVDLDKDGRISFEEFKTMMKSGADWKMSSRQYSRAMLNALSFRLFKDKSVRVNN 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90728g00006 572 SUPERFAMILY Protein kinase-like (PK-like) 48 335 IPR011009 -
Stsc90728g00006 572 Gene3D Phosphorylase Kinase; domain 1 72 155 - -
Stsc90728g00006 572 Pfam EF-hand domain pair 475 538 IPR002048 GO:0005509
Stsc90728g00006 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Stsc90728g00006 572 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Stsc90728g00006 572 ProSiteProfiles EF-hand calcium-binding domain profile. 508 543 IPR002048 GO:0005509
Stsc90728g00006 572 PANTHER SERINE/THREONINE-PROTEIN KINASE 64 530 - -
Stsc90728g00006 572 SUPERFAMILY EF-hand 364 539 IPR011992 -
Stsc90728g00006 572 CDD EFh 477 538 IPR002048 GO:0005509
Stsc90728g00006 572 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Stsc90728g00006 572 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Stsc90728g00006 572 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Stsc90728g00006 572 SMART efh_1 476 504 IPR002048 GO:0005509
Stsc90728g00006 572 SMART efh_1 442 468 IPR002048 GO:0005509
Stsc90728g00006 572 SMART efh_1 512 540 IPR002048 GO:0005509
Stsc90728g00006 572 SMART efh_1 375 403 IPR002048 GO:0005509
Stsc90728g00006 572 FunFam Calmodulin 1 436 540 - -
Stsc90728g00006 572 CDD STKc_CAMK 69 327 - -
Stsc90728g00006 572 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Stsc90728g00006 572 Gene3D Transferase(Phosphotransferase) domain 1 156 336 - -
Stsc90728g00006 572 Gene3D - 337 540 - -
Stsc90728g00006 572 FunFam calcium-dependent protein kinase 13 156 336 - -
Stsc90728g00006 572 SMART serkin_6 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90728g00006 572 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Stsc90728g00006 572 ProSiteProfiles Protein kinase domain profile. 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90728g00006 572 ProSitePatterns EF-hand calcium-binding domain. 521 533 IPR018247 -
Stsc90728g00006 572 MobiDBLite consensus disorder prediction 1 45 - -
Stsc90728g00006 572 Pfam Protein kinase domain 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90728g00006 572 MobiDBLite consensus disorder prediction 24 45 - -
Stsc90728g00006 572 FunFam Calcium-dependent protein kinase 1 72 155 - -
Stsc90728g00006 572 Pfam EF hand 378 397 IPR002048 GO:0005509
Stsc90728g00006 572 Pfam EF hand 446 464 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90728g00006 Stsc-Chr90728 47018 49984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90728g00006 1 565 EF-hand Containing Proteins AT2G31500 62.148 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc90728g00006 Pkinase 2.6e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90728g00006 K13412 - gmx:100818929 836.254