Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90728g00005 ATGGACTCCGAGGACGATATGCATGACGCCAATGACCTTGAATCCCTTGACGACGATTACTACAGTGGCGGCACGGAGGATGCTGCCATGGATTACTACAGCGACTACGATGACGATGCCGATGATTACTTCGACGAAGCTGATGATTCCGAAAGGCTCGAGTCTCGCCGCCCTGAGGTGTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGATCGAGTCCGCAAAGCAGTTGGCTTGTTGGATAAGCCAATCGTCGAGCATGGCGATGCTAGAGAGCTTACCTGCGGCATCTGCTTTGAAAATCATCCACGTGCTAAGATAGAGATGGCTTCTTGTGGTCATCCTTTTTGTCTCTTGTGCTGGGAAGGATATATCAGCACATCCATTAATGATGGCCCTGGATGTTTGATGCTGAGATGTCCTGATCCCAGTTGTGGTGCTGCTGTTGGGCAAGATATGATTAACCGAGTAGCACCTGATGAAGATAAACAGAAGTATTCCCGCTACCTTCTTAGGTCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCGGCTCCAGGTTGTGAATATGCAGTTACTTTCGATGCGGGTAGCGGAAATTATGATGTCTCTTGCCTTTGTTCGTATTGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGTCAAAGTGGATTTTGAAGAACAGTGCAGAATCTGAAAACATGAACTGGATTCTTGCCAACTCAAAGCCATGCCCCAAATGCAAACGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACATGTACACCACCATGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCAGACCATGGTGAAAGAACCGGTGGTTTTTATGCTTGCAATCGATATGAAGCAGCTAAACAGGAAGGAGTGTATGATGATGCTGAAAGAAGAAGAGAGATGGCCAAGAATTCGTTGGAGAGATACACTCATTATTATGAGCGATGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATCTTGAGAAGCTCAGTGACATTCAATGTCAGCCTGAATCACAGCTAAAGTTCATAACAGAGGCCTGGCTACAGATAGTTGAGTGTAGGCGAGTGCTGAAATGGACATATGCATATGGGTTCTATTTACCAGAGCATGAGCATGCCAAAAAGCAGTTTTTTGAGTACTTACAAGGTGAAGCAGAGTCTGGTCTAGAGAGACTTCATCAATGTGCCGAAAAGGAACTACAACCATTCCTCAATGCTGATGGCCCATCTAAAGAATTCAATGACTTTCGTACAAAACTAGCAGGATTGACTAGTGTGACTAGAAACTACTTCGAGAATTTAGTTAGGGCTTTGGAAAATGGTCTAGCTGATGTGGATAGTAACGGGGCAGCCTCCAGCAAAGCAACAAGCTCAAAAGGCGCTTCACCAAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGTAAGCTTCCGAAGTAGCATGTCCAGCAGAATGGCTGATGATAATAGTCATTGGAGCTGCGACCAGTGTACCTACGCAAATGTCAGATCTGCCACAGTATGCCAGATGTGCAATCAACCACGCCGGTGA 1656 0.4577 MDSEDDMHDANDLESLDDDYYSGGTEDAAMDYYSDYDDDADDYFDEADDSERLESRRPEVWSVSKVHDAWFADEDRVRKAVGLLDKPIVEHGDARELTCGICFENHPRAKIEMASCGHPFCLLCWEGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINRVAPDEDKQKYSRYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKATSSKGASPSSKGRGGRGKVSFRSSMSSRMADDNSHWSCDQCTYANVRSATVCQMCNQPRR 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90728g00005 551 ProSiteProfiles Zinc finger RING-type profile. 99 143 IPR001841 -
Stsc90728g00005 551 MobiDBLite consensus disorder prediction 484 525 - -
Stsc90728g00005 551 MobiDBLite consensus disorder prediction 484 500 - -
Stsc90728g00005 551 MobiDBLite consensus disorder prediction 31 48 - -
Stsc90728g00005 551 ProSiteProfiles Zinc finger RanBP2 type profile. 523 551 IPR001876 -
Stsc90728g00005 551 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 62 396 IPR031127 GO:0004842|GO:0016567
Stsc90728g00005 551 SMART ibrneu5 168 230 IPR002867 GO:0008270
Stsc90728g00005 551 SMART ibrneu5 243 304 IPR002867 GO:0008270
Stsc90728g00005 551 FunFam RBR-type E3 ubiquitin transferase 93 182 - -
Stsc90728g00005 551 CDD Rcat_RBR_ARI7-like 253 307 - -
Stsc90728g00005 551 CDD BRcat_RBR_ANKIB1 175 239 - -
Stsc90728g00005 551 SUPERFAMILY RING/U-box 249 297 - -
Stsc90728g00005 551 Gene3D - 226 481 - -
Stsc90728g00005 551 Gene3D - 521 551 - -
Stsc90728g00005 551 FunFam RBR-type E3 ubiquitin transferase 231 481 - -
Stsc90728g00005 551 Pfam Ariadne domain 317 496 IPR045840 -
Stsc90728g00005 551 MobiDBLite consensus disorder prediction 511 525 - -
Stsc90728g00005 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 182 IPR013083 -
Stsc90728g00005 551 ProSiteProfiles TRIAD supradomain profile. 95 308 IPR044066 -
Stsc90728g00005 551 SUPERFAMILY RING/U-box 169 237 - -
Stsc90728g00005 551 MobiDBLite consensus disorder prediction 1 51 - -
Stsc90728g00005 551 Pfam IBR domain, a half RING-finger domain 168 230 IPR002867 GO:0008270
Stsc90728g00005 551 Pfam IBR domain, a half RING-finger domain 247 295 IPR002867 GO:0008270
Stsc90728g00005 551 CDD RING-HC_ARI6-like 96 157 - -
Stsc90728g00005 551 SUPERFAMILY Ran binding protein zinc finger-like 523 550 IPR036443 -
Stsc90728g00005 551 ProSitePatterns Zinc finger RanBP2-type signature. 527 546 IPR001876 -
Stsc90728g00005 551 SMART zf_4 525 549 IPR001876 -
Stsc90728g00005 551 SUPERFAMILY RING/U-box 95 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90728g00005 Stsc-Chr90728 40415 44845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90728g00005 61 550 ARIADNE family AT1G65430 74.490 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90728g00005 K11968 - gmx:100810427 975.311