Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90726g00008 ATGGGTAGGGGAAAGATCGAAATCAAAAGGATTGAGAATGCTAACAGCAGACAAGTTACATTCTCGAAAAGAAGAACAGGTCTTCTTAAGAAAGCTCAGGAACTTGCTATTCTCTGTGATGCTGAGGTTGCTGTCATCATCTTCTCTAATACAGGGAAGCTCTTTGAGTTCTCTAGTTCTGGCATGAAGCGAACACTTTCAAGGTACAACAAATGCACCGATTCTTCAGAGGTGGCTATAGTTGAATGTAAAGCAGAGAAAGAAGATTCTAAGATGGTGGAGGCTCTTAAAGATGAAATTGCAAAGCTAGAAACAAATCAATTACGGCTGCTGGGTAAAGACCTGACAGGATTGAGCGTAAAAGAACTGCAACATCTAGAGCAGCAACTTAACGAAGGGTTATTGGCAGTCAAGGAGAGGAAGGAGGAATTACTTATGGAGCAACTCGAGCAATCTAGGGTTCAGGAACAGAGAGCTATGTTGGAGAATGAAACTTTGAGAAGACAGGTTGAGGAGCTTCGTTGTCTGTTTCCGGTAACGGAACGTGTAGTCCCGTCTTATCTTCACTATCCCCAAGTGGAAAGGAAGAATGTTTTTGTAGATAATGGTGTTGTTAAGTGTACAAGCTTGGTGAGTAACTGTGAAAATGAGAGAGGAGATTCCGACACCGCATTGCATTTAGGGTTGCCAACCGATGTTAATCACAAAAGGAAGGGAACTGAGAGAGAAACATTTTCGAATGATTCGGAAAGCCAAGTTGCTCTACTCTGA 771 0.4228 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSEVAIVECKAEKEDSKMVEALKDEIAKLETNQLRLLGKDLTGLSVKELQHLEQQLNEGLLAVKERKEELLMEQLEQSRVQEQRAMLENETLRRQVEELRCLFPVTERVVPSYLHYPQVERKNVFVDNGVVKCTSLVSNCENERGDSDTALHLGLPTDVNHKRKGTERETFSNDSESQVALL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90726g00008 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc90726g00008 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Stsc90726g00008 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc90726g00008 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc90726g00008 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc90726g00008 256 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc90726g00008 256 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Stsc90726g00008 256 MobiDBLite consensus disorder prediction 219 256 - -
Stsc90726g00008 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc90726g00008 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc90726g00008 256 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc90726g00008 256 Coils Coil 123 143 - -
Stsc90726g00008 256 Coils Coil 86 113 - -
Stsc90726g00008 256 Pfam K-box region 89 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc90726g00008 256 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Stsc90726g00008 256 MobiDBLite consensus disorder prediction 231 245 - -
Stsc90726g00008 256 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Stsc90726g00008 256 Coils Coil 149 176 - -
Stsc90726g00008 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90726g00008 Stsc-Chr90726 68691 71411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90726g00008 1 249 MADS-box Gene Family AT5G13790 56.349 4.18e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc90726g00008 K-box 5.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90726g00008 - - zju:107417456 369.007