Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc90726g00006 | ATGCAAAATCAACAAGAGGTTAGAAGAGGAGGAGAAGATGATGAAGAAGGGAATAAGAAAAAGGAGGAGACAGCTCCTTTATTAGCATTGAATCACGTTTCAAGGCTGTGTAGAGACGTGAAGAAGTCGATAGAGTTTTACAGCAAGGTGTTGGGGTTTGTCCTTATTGAGAGGCCTCAAGTTTTGGACTTCGAAGGGGCATGGTTGTTCAACTATGGCGTTGGTATCCACTTGGTTCAATCTGACCAAGAAGATCGATTGCCCAACGATACTCAACACTTGGATCCTCAAGACAATCATATATCTTTTCAGTGTGAAGATATGGAAGATATGGAGAGGAAATTGAAGGAGGTGAATGTGAAGTACAAGAAACGGACGCTGGAAACAGAAGATGGAAAAGCAATGGACCAACTTTTCTTCAACGACCCAGATGGGTTCATGGTTGAAATTTGCAACTGTGAGAATCTCAAACTTGTACCTGCTGGTTCACTAGGCAAAATTATGTTACCAATAGATCGCCATACCCCACCCGTGGACACTAATCATCAGAACCACCATAATAATGATGTAGCAGATCAATGA | 582 | 0.4192 | MQNQQEVRRGGEDDEEGNKKKEETAPLLALNHVSRLCRDVKKSIEFYSKVLGFVLIERPQVLDFEGAWLFNYGVGIHLVQSDQEDRLPNDTQHLDPQDNHISFQCEDMEDMERKLKEVNVKYKKRTLETEDGKAMDQLFFNDPDGFMVEICNCENLKLVPAGSLGKIMLPIDRHTPPVDTNHQNHHNNDVADQ | 193 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc90726g00006 | 193 | MobiDBLite | consensus disorder prediction | 174 | 193 | - | - | |
| Stsc90726g00006 | 193 | MobiDBLite | consensus disorder prediction | 7 | 23 | - | - | |
| Stsc90726g00006 | 193 | PANTHER | - | 19 | 184 | - | - | |
| Stsc90726g00006 | 193 | SUPERFAMILY | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 26 | 152 | IPR029068 | - | |
| Stsc90726g00006 | 193 | Coils | Coil | 108 | 128 | - | - | |
| Stsc90726g00006 | 193 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Stsc90726g00006 | 193 | Gene3D | - | 31 | 153 | IPR029068 | - | |
| Stsc90726g00006 | 193 | ProSiteProfiles | Vicinal oxygen chelate (VOC) domain profile. | 29 | 153 | IPR037523 | - | |
| Stsc90726g00006 | 193 | CDD | VOC_like | 30 | 150 | - | - | |
| Stsc90726g00006 | 193 | Pfam | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | 30 | 150 | IPR004360 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc90726g00006 | Stsc-Chr90726 | 51835 | 53146 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc90726g00006 | 38 | 156 | Calmodulin-binding Proteins | AT1G08110 | 25.000 | 6.46e-06 | 43.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc90726g00006 | - | - | aip:107629668 | 310.071 |