Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90725g00017 ATGAAAACAATAGTGTTAGGATCAAAGAAGATTTCCATTCTGTGTTTGATTCTTTTAATAACTACTACTACTACTGCATCATCAGAATTTAATGTAGAAAGCTATGAAGCTGATAGAGTAAGAGATCTTCCTGGCCAACCTTCAAGCCCATCTGTCTCACACTTTTCAGGATATATCACTGTCAATCAAGAACATGGGAGGGCCCTCTTCTATTGGTTCTTTGAAGCTCAATCTGATCCATCCAACAAGCCTCTCCTTCTCTGGCTCAATGGAGGACCTGGATGCTCCTCAATTGGGTATGGTTCTGTAGTTGAAATTGGACCTCTTTTAGTCAACAAAAATGGTGAAGGACTACAATTCAACCCATATGCATGGAATCAAGAAGCAAATTTATTATTTGTGGAGTCCCCTGTTGGAGTTGGTTTCTCTTACACCAACACTTCCTCTGACCTCACCATATTAGAGGATAGCTTTGTAGCTGAGGATGCCTACAATTTCTTGGCAAATTGGCTACAAAGATTCCCTCAGTTCAAATCAAGGGACTTCTTTATATCAGGAGAAAGCTATGCTGGCCATTATGTCCCTCAGCTTGCAGAGCTAGTGTTTGATCGAAATAAGGATAGAAACAAGTACCCTTTTATTAATATTAAAGGTTTTATTGTGGGGAATCCAGAAACTGATGATTATTATGACAACAAAGGGCTTCTAGAATATGCATGGAGCCATGCAGTTATATCAGATGAACAATATGAGAAAGCAAAGAAAGTATGTGATTTCAAACAAAGTGATTGGTCTAAGGAATGCAATGATGCCATGAACATAGTGTGGCAAGATTACTCAGAAATTGACATATACAACATTTATGCCCCAAAATGTACTCTAAATAGCAGCACTTCCTCATTATTATTAGCTGATGATGATGATGAAATTGAGAGAAAGAGAATGAGAATTTTTGGTGGCTATGACCCTTGCTATTCCACATATGCAGAACAATATTTCAATAAGATAGATGTTCAGTCATCTTTTCATGCTAATATTAGAGGAGGAAACACCACTAGTTTAACATGGAAGGTTTGCAATGATTCCATATTGAGGACATACAACTTCTCTGTATTTTCGATCCTACCCATCTACACCAAACTCATCAAGGGTGGGCTTAAGATATGGGTTTACAGTGGAGATGCAGATGGAAGAGTACCTGTGATAGGGACACGGTATTGCATTGAGGCCCTTAATTTAACTCTCAAGACTAGTTGGCGTACTTGGTACCATCAAAATCAGGTGGGAGGAAGGATAGTGGAATATGAAGGGGTGACATATGTGACAGTGAGAGGGGCAGGTCACTTGGTGCCTCTCAACAAACCCAGTGAAGCTCTTTCCCTAATTCATTCCTTCCTAACAGGGGACCATCTTCCTACTCGCTAA 1425 0.3958 MKTIVLGSKKISILCLILLITTTTTASSEFNVESYEADRVRDLPGQPSSPSVSHFSGYITVNQEHGRALFYWFFEAQSDPSNKPLLLWLNGGPGCSSIGYGSVVEIGPLLVNKNGEGLQFNPYAWNQEANLLFVESPVGVGFSYTNTSSDLTILEDSFVAEDAYNFLANWLQRFPQFKSRDFFISGESYAGHYVPQLAELVFDRNKDRNKYPFINIKGFIVGNPETDDYYDNKGLLEYAWSHAVISDEQYEKAKKVCDFKQSDWSKECNDAMNIVWQDYSEIDIYNIYAPKCTLNSSTSSLLLADDDDEIERKRMRIFGGYDPCYSTYAEQYFNKIDVQSSFHANIRGGNTTSLTWKVCNDSILRTYNFSVFSILPIYTKLIKGGLKIWVYSGDADGRVPVIGTRYCIEALNLTLKTSWRTWYHQNQVGGRIVEYEGVTYVTVRGAGHLVPLNKPSEALSLIHSFLTGDHLPTR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90725g00017 474 Gene3D - 374 468 - -
Stsc90725g00017 474 FunFam Carboxypeptidase 34 294 - -
Stsc90725g00017 474 Pfam Serine carboxypeptidase 44 467 IPR001563 GO:0004185|GO:0006508
Stsc90725g00017 474 FunFam Carboxypeptidase 374 468 - -
Stsc90725g00017 474 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 455 IPR001563 GO:0004185|GO:0006508
Stsc90725g00017 474 Gene3D alpha/beta hydrolase 34 294 IPR029058 -
Stsc90725g00017 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Stsc90725g00017 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Stsc90725g00017 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 438 451 IPR001563 GO:0004185|GO:0006508
Stsc90725g00017 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Stsc90725g00017 474 Gene3D - 324 363 - -
Stsc90725g00017 474 FunFam Carboxypeptidase 321 471 - -
Stsc90725g00017 474 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
Stsc90725g00017 474 ProSitePatterns Serine carboxypeptidases, histidine active site. 438 455 IPR033124 GO:0004185
Stsc90725g00017 474 SUPERFAMILY alpha/beta-Hydrolases 40 469 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90725g00017 Stsc-Chr90725 92588 95830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90725g00017 356 471 Calmodulin-binding Proteins AT2G22960 31.624 4.30e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90725g00017 K16297 - gmx:100815141 771.541