Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90725g00001 ATGGAAGAAGGGAAGAGAGAGAAGAAGATAGAAGAAGCAACAACATCCACTACTACTTCAACTACTATGGCATTTTCCGATGAGATTCCGATCACAAACACAAACACCATCACCACTTCTTCTTACCCTTTCTCAAGCATCTTCGACATGATGCCACTTCCATTAATACCATCTTCTGATCAGAAAACTTGTTCCTTCTCTGCCAATGGCTTCATCGACTTGCTTGCTCTTCAAGACTACACTCCTTCCTTATTCGATTGGCTCCCCGCAACCACAACCACCACCACCGCCTCCGGCGCACCCACGCCTCCGCATCAGGCTCTTCCGTCGCCGGCGAGCTCAAACGTTCCGGACTGTTCGGAGGTGTTGAACACTCCGGCATCACCAAACTCGTCGTCGATATCGTCTTCGTCGAACGAAGGCGGCGTCGGCGGCAACAACGCGGAAGATCAAAACGGTGGAAAAGTTGATGAACATGAAGCAGAGGATGAGGAAGCTGATGCCGATGCTGATGCACCGAAAGACAAGACTAAGAAACAGTTGAAAGCAAAGAAGAAGAACCAAAAGAAACAAAGGGAGCCACGGTTCGCGTTTATGACGAAGAGCGAAGTGGATCATTTAGACGATGGCTATAGATGGCGAAAGTACGGACAAAAAGCTGTTAAAAACAGCCCTTATCCAAGTAGGAGCTACTATCGTTGCACCACATCGGGGTGTGGCGTGAAGAAGCGCGTGGAGCGTTCTTGCGATGATCCAAGCATTGTGGTGACCACATACGAAGGCCAGCATACTCATCCTTGTCCGGCTACTTCACGCGCCGCACTCGCCTTCATGCACGAGCCGCCTTCTTCCTTCACCACCATTGGATCTGGCCCCGCCGCTGTTCTTTCTTCTCCGCACTTTCTCCACCAACACTTCCACCACCAACCCCCGCCACCACCGCCTCCTTTGATATATAATAACAACTCTACTGCAATTACTGCTGGTGTTGAGAGCTTTGTGGTTCAGGGTGATGGAGAAGGGTCAGGTAGTGCGGCATCTTCTTCTAGGTTGATGATGGATCAAGCTAATTTCTTGAGAGACAATGGCCTTCTTCAGGACATTATTGTTCCTTCTCACATCAGGAATAACATCATCCAATGA 1143 0.4952 MEEGKREKKIEEATTSTTTSTTMAFSDEIPITNTNTITTSSYPFSSIFDMMPLPLIPSSDQKTCSFSANGFIDLLALQDYTPSLFDWLPATTTTTTASGAPTPPHQALPSPASSNVPDCSEVLNTPASPNSSSISSSSNEGGVGGNNAEDQNGGKVDEHEAEDEEADADADAPKDKTKKQLKAKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPSRSYYRCTTSGCGVKKRVERSCDDPSIVVTTYEGQHTHPCPATSRAALAFMHEPPSSFTTIGSGPAAVLSSPHFLHQHFHHQPPPPPPPLIYNNNSTAITAGVESFVVQGDGEGSGSAASSSRLMMDQANFLRDNGLLQDIIVPSHIRNNIIQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90725g00001 380 ProSiteProfiles WRKY domain profile. 202 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90725g00001 380 SUPERFAMILY WRKY DNA-binding domain 199 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90725g00001 380 Pfam WRKY DNA -binding domain 208 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90725g00001 380 MobiDBLite consensus disorder prediction 1 20 - -
Stsc90725g00001 380 MobiDBLite consensus disorder prediction 111 146 - -
Stsc90725g00001 380 FunFam WRKY transcription factor 57 193 268 - -
Stsc90725g00001 380 MobiDBLite consensus disorder prediction 95 193 - -
Stsc90725g00001 380 Gene3D WRKY domain 191 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90725g00001 380 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 125 283 IPR044810 GO:0003700
Stsc90725g00001 380 SMART WRKY_cls 207 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90725g00001 Stsc-Chr90725 10811 12680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90725g00001 44 379 WRKY Transcription Factor Family AT5G49520 46.418 3.22e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc90725g00001 WRKY 1.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90725g00001 - - gmx:100788697 281.952