Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90724g00009 ATGAACGAAGCCCGAATAGAAATCACGATTCCACACTTGTTCAGATGCCCAATAAGCTTAGACTTGTTGGAAGATCCAGTGACTCTATGCACAGGCCAAACCTATGACAGATCAAGCATTGAGAAATGGCTTTCTGCTGGTAACCTCACTTGCCCAGTCACAATGCAGAAGCTTCACGATCCTTCCATTGTTCCCAACCACACTCTCCGCCACTTGATCGACCAGTGGCTCCAACTTGGCCACCAATTCCACCCCGGAAACTCCGCAACAATCGATTACCTGACCGCTCTTAAGCACGCCCTCCAGTCTCCCGACTCCACCTTGGACCACAAGTTACAAGCACTCGACAAGATTCAAGTACTCTCCGACGAGTACTGCTCCTTCAAGCGGTCGTGCTTCAACCAACTGAGCTATTTGACAGTTCTTCTAGAACTCGTTTTCCATAGAAATCCCGAATATATATCCATGGAATTCACTGAGTTGGCGCTCTCTTGCATCCTAAAGTTGCTTCCTCTGGTGAATTTGGATCCACTGAACATGATCAAAGACGAGCCGAATTTATCTACCTTTGTTTTGTTACTGGAGAAAGGAACAACCAAGATCAAAACAAGCTTGTGCTATCTTATAGAATCAACATCAACATCAACACAAACGCAAGAGCTATGCCACGTTCTTGGAAATTCAAGGAAGGTCATAGAAGAGATTGTTAAACTAACTCGGCAAATCGATGACGAGGATTCATCCAAAGCAGGAATGAAAGCCATGGCAGCATTATGCAGCTTGCAATCGAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATAGATGGAGTGATAGCATACATGTCAGGATGTGAGAAGAAGAATGTGGTGGGTCCAATGGCAATGGGGATAATAGAGAAGCTTGTGATGTTAGAGAGTGGGAAAGTGGGGGTGGTTGAGCACCCAAGTGGGGTTGAGACTGTGGTCAAGATGGTGTTCAGGGTTTGCAATAACCAAGAGTATTGGTGTAGTGAGGTTGCTGTTGGGGTGCTTTTGGTAATTTGTCGTGACTATGGAGTTGCAAGAGAGGAAGCCATTGGAGCTGGGATCTTGACTCAGTTGCTTTTCCTTCTTCAGAGTCAGTGTGGTAACAAAACCAAGACCAAGGCCAGGATGCTTCTCAAGCTCTTGAGATCAAAGTGGAACGACGAATCAAACATCAAGAAACTATGA 1212 0.4571 MNEARIEITIPHLFRCPISLDLLEDPVTLCTGQTYDRSSIEKWLSAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGHQFHPGNSATIDYLTALKHALQSPDSTLDHKLQALDKIQVLSDEYCSFKRSCFNQLSYLTVLLELVFHRNPEYISMEFTELALSCILKLLPLVNLDPLNMIKDEPNLSTFVLLLEKGTTKIKTSLCYLIESTSTSTQTQELCHVLGNSRKVIEEIVKLTRQIDDEDSSKAGMKAMAALCSLQSNRESLVRGGAIDGVIAYMSGCEKKNVVGPMAMGIIEKLVMLESGKVGVVEHPSGVETVVKMVFRVCNNQEYWCSEVAVGVLLVICRDYGVAREEAIGAGILTQLLFLLQSQCGNKTKTKARMLLKLLRSKWNDESNIKKL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90724g00009 403 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Stsc90724g00009 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Stsc90724g00009 403 SUPERFAMILY RING/U-box 5 78 - -
Stsc90724g00009 403 Gene3D - 184 403 IPR011989 -
Stsc90724g00009 403 CDD RING-Ubox_PUB 11 58 IPR045210 -
Stsc90724g00009 403 FunFam RING-type E3 ubiquitin transferase 10 81 - -
Stsc90724g00009 403 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Stsc90724g00009 403 SUPERFAMILY ARM repeat 96 377 IPR016024 -
Stsc90724g00009 403 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Stsc90724g00009 403 PANTHER WDSAM1 PROTEIN 7 400 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90724g00009 Stsc-Chr90724 55579 56790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90724g00009 8 396 U-box Gene Family AT3G19380 33.580 9.57e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90724g00009 - - gmx:100815247 543.888