Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90723g00008 ATGAAGATGGGTTCTTTCTTCATGAGGGCCTCCTCTGCTCTCAAAAGATACCCTTCATCCTCCAACCTTCTTCTTCTCTGCACTCTCAGCTTCAGTGGTGGAGGTGTAGTGGCATACTCAGAATCAAGATCAGAAACTGAACATCCTATTGTTGATGCGGGTGTGGTCCCAAAAAAGAAAGTAGTGGTTCTTGGAACAGGCTGGGCTGGTACCAGTTTCCTTAAGGATCTGGATGCTTCACGGTACGACGTTCAGGTTGTTTCGCCTCGTAACTACTTTGCATTCACTCCCTTGTTACCCAGTGTCACTTGTGGAACAGTTGAAGCACGGAGCATTGTAGAGCCGGTTCGAACCTTAATAAAAAAGAGTAAAGGTGAAATCAAATATTGGGAGGCAGAGTGTGTCAAGATTGATGCTGCAAATAGAAAGGTCTTTTGTAATTCCAATATCAACAACTTAGTCGGAAGAGGCGAATTTTCTTTGGACTATGACTTCTTAGTTTTAGCAGTTGGATCACAAGTAAATACTTTTAACACCCCTGGAGTGAAAGAGAACTGCCATTTTCTGAAGGATATCGAGGATGCTAAGAGGATCAGACTGTCTATCACTGATTGCTTTGAGAAGGCTGTTCTTCCTAGTTTATCCGAAGAAGAGCGAAGGTCGAATCTTCATTTTGTAGTTGTAGGAGGGGGTCCAACTGGAGTGGAATTTGCTGCAGAGCTCCATGATTATGTCCAAGAAGATTTGAGAAACTTATATCCAGCTGTTAAGGATTTGGTGAAGATAACATTGATTCAATCAGGAGATCACATCCTGAATACGTTTGATCAAAGAATAAGTACATTTGCTGAGCAGAAGTTTACAAGAGACGGAGAGGTTTGCTCTGTGCCGCACGGATTGATTGTCTGGTCCACTGGCATTTCAACTATTCCAGTTATAAAGGACTTCATGGAACAAGTTGGTCAGGGTAAAAGACGTGTACTAGCAACCGACGAATGGTTGCGAGTGAAAGGATGTAAAGATGTATATGCAATTGGTGATTGTTGTACAATAGATCAACGAAAGATCATGGATGATATCTCAGCCATATTTGCGGCTGCGGACAAAAACAACTCTGGTACATTAACCATCGAAGAATTCCAGGATGTGATGGATGACATCTTATTAAGATATCCACAAGTTGAACTTTTCTTGAAGAAAAAACATCTTCTTGATTTCACCTCTCTCTGGTTAGATTCACAAGGGAATGAAAGAAAAGAGATAGACATAGAAGGGTTTAAGCAGGCTCTTTCTCATGCAGATTCACAGATGAAGAGTCTTCCAGCTACTGCACAGGTTGCTGCCCAACAAGGTACCTATCTAGCTAGATGCCTTAACCGAATGGATCAATGTGAAGAGAATCCTGAAGGTCCTCGGCGATTTAGAGGAACCGGACGACATAAGTTTCTTCCCTTCCGGTATAAGCATTTCGGGCAATTCGCACCGCTTGGTGGCGAGCAAGCGGCCGCGGAACTTCCCGGAGACTGGGTTTCCATGGGTCACAGCACTCAATGGCTCTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACAAGGGTATTGGTGATATCTGATTGGACTAGAAGATTCATCTTTGGAAGAGACTCAAGTCGTGTTTAA 1665 0.433 MKMGSFFMRASSALKRYPSSSNLLLLCTLSFSGGGVVAYSESRSETEHPIVDAGVVPKKKVVVLGTGWAGTSFLKDLDASRYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRTLIKKSKGEIKYWEAECVKIDAANRKVFCNSNINNLVGRGEFSLDYDFLVLAVGSQVNTFNTPGVKENCHFLKDIEDAKRIRLSITDCFEKAVLPSLSEEERRSNLHFVVVGGGPTGVEFAAELHDYVQEDLRNLYPAVKDLVKITLIQSGDHILNTFDQRISTFAEQKFTRDGEVCSVPHGLIVWSTGISTIPVIKDFMEQVGQGKRRVLATDEWLRVKGCKDVYAIGDCCTIDQRKIMDDISAIFAAADKNNSGTLTIEEFQDVMDDILLRYPQVELFLKKKHLLDFTSLWLDSQGNERKEIDIEGFKQALSHADSQMKSLPATAQVAAQQGTYLARCLNRMDQCEENPEGPRRFRGTGRHKFLPFRYKHFGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVISDWTRRFIFGRDSSRV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90723g00008 554 SUPERFAMILY EF-hand 352 440 IPR011992 -
Stsc90723g00008 554 SUPERFAMILY FAD/NAD(P)-binding domain 224 365 IPR036188 -
Stsc90723g00008 554 Pfam Pyridine nucleotide-disulphide oxidoreductase 293 357 IPR023753 GO:0016491
Stsc90723g00008 554 SMART efh_1 359 387 IPR002048 GO:0005509
Stsc90723g00008 554 ProSiteProfiles EF-hand calcium-binding domain profile. 355 390 IPR002048 GO:0005509
Stsc90723g00008 554 Pfam Pyridine nucleotide-disulphide oxidoreductase 59 291 IPR023753 GO:0016491
Stsc90723g00008 554 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 401 553 - -
Stsc90723g00008 554 SUPERFAMILY FAD/NAD(P)-binding domain 58 276 IPR036188 -
Stsc90723g00008 554 Gene3D - 398 554 - -
Stsc90723g00008 554 Gene3D - 50 292 - -
Stsc90723g00008 554 Gene3D - 293 381 - -
Stsc90723g00008 554 PANTHER NADH DEHYDROGENASE 57 291 IPR045024 GO:0003954|GO:0006116
Stsc90723g00008 554 ProSitePatterns EF-hand calcium-binding domain. 368 380 IPR018247 -
Stsc90723g00008 554 PRINTS FAD-dependent pyridine nucleotide reductase signature 163 181 - -
Stsc90723g00008 554 PRINTS FAD-dependent pyridine nucleotide reductase signature 61 80 - -
Stsc90723g00008 554 PRINTS FAD-dependent pyridine nucleotide reductase signature 224 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90723g00008 Stsc-Chr90723 88660 92451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90723g00008 1 554 Chloroplast and Mitochondria Gene Families AT4G21490 61.750 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90723g00008 K03885 - gmx:100793566 914.45