Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90721g00018 ATGGATAATCATTATGATTCAAATTGTGGAGGGATTCTTGAGAATGTATGGGCTAAAATTATCAGCAATCAAAGAGGAGAAGATCATCATGTCAGAACATATGGTGATGCTGATGCAGCAGAACAACCCTGCAATTCATCATGGGAAGAACTTCCAGAGCTTGATGGAAGAGACAACAATATTCTGCAGAGGCTTCCAAGCTTAGGGAGGTGGATATCAATGGGAGCTGATTTCTGGGAAGATGTTCTAGAAGGAATTGTTATTAACCCAAATGATCATCCAGCACCAGAAGCAGCAGCAGCAAGAAAGAATAATGAACAAGATACTAAAGAATTAGAGAAGAGGGTGAAGATGACAGAGAAAAAGGTGGTTACAAAGCACTACAGAGGAGTAAGGAGAAGGCCATGGGGGAAATATGCGGCGGAGATTCGAGATTCGTCGAAGAAAGGTGCTAGAGTTTGGCTTGGGACATTTGAGACAGCTGAGGAAGCAGCATTGGCTTATGATAAAGCTGCTTTGAGGATTAGAGGGCCAAAGGCATATCTCAATTTCCCATTTGAGACTGTTTCAAAAGCTTTACAATTTGGTCATAAAGTTGATCATCATTGTAATAATAGCTTGTCACGGAAGAGAGGATCATCATCAATATCAAGGGGCAGGGATGATGATGAATTTGGTGAACCTCCAACAAAGAAGGTAGCAGCAGCAGCAGCAGGAGGGTTTGATGATGAAGGGATGTTAGATGTTTTTGTGTTTCAGGATTTAGGGAGTGATTACTTGGATAATTTGCTGTCTTCCTTTTAA 804 0.4129 MDNHYDSNCGGILENVWAKIISNQRGEDHHVRTYGDADAAEQPCNSSWEELPELDGRDNNILQRLPSLGRWISMGADFWEDVLEGIVINPNDHPAPEAAAARKNNEQDTKELEKRVKMTEKKVVTKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPFETVSKALQFGHKVDHHCNNSLSRKRGSSSISRGRDDDEFGEPPTKKVAAAAAGGFDDEGMLDVFVFQDLGSDYLDNLLSSF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90721g00018 267 MobiDBLite consensus disorder prediction 214 229 - -
Stsc90721g00018 267 SUPERFAMILY DNA-binding domain 127 187 IPR016177 GO:0003677
Stsc90721g00018 267 Gene3D AP2/ERF domain 126 187 IPR036955 GO:0003700|GO:0006355
Stsc90721g00018 267 MobiDBLite consensus disorder prediction 204 229 - -
Stsc90721g00018 267 Pfam AP2 domain 127 177 IPR001471 GO:0003700|GO:0006355
Stsc90721g00018 267 CDD AP2 126 185 IPR001471 GO:0003700|GO:0006355
Stsc90721g00018 267 SMART rav1_2 127 191 IPR001471 GO:0003700|GO:0006355
Stsc90721g00018 267 Coils Coil 102 122 - -
Stsc90721g00018 267 PANTHER DNA-BINDING DOMAIN 105 214 IPR044808 GO:0003700|GO:0009873
Stsc90721g00018 267 ProSiteProfiles AP2/ERF domain profile. 127 185 IPR001471 GO:0003700|GO:0006355
Stsc90721g00018 267 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Stsc90721g00018 267 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Stsc90721g00018 267 FunFam Ethylene-responsive transcription factor 2 126 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90721g00018 Stsc-Chr90721 109387 110190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90721g00018 10 267 AP2-EREBP Transcription Factor Family AT4G18450 33.651 1.15e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90721g00018 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90721g00018 - - aip:107624160 325.479