Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90721g00015 ATGATTTGGCTCTTCTTTTTTCTTGTTTTCACCAATGCAAACTCACATGAGGCCAAGAATGAAGGCAGCAAAGTTATATCAGTTGGGGCAATCATTGATGCTAATTCTCGTGTAGGGAAAGAGCAGAAAGTAGCCATGGAAATTGCAGCACAAAGGTACAATAACACTTCAAGGACCTACAAGTTGTCTCTCCATTTTCAAAACTCCACAATGGACCCCATAAGTGCCACCATTGTTGCTGAAGAAATGATAAGAATGCAGAAAGTGCAAGTAATTTTAGGATTGCACACATGGCCAGAAGCAGCTCTTGTAGCAGAAATAGGATCAAGATTTCAAGTTCCTACTATATCCTATGCAGAACCTTCCATCACTCCACCATTGATGTCAATTCGGTGGCCTTTTTCGGTAAGAATGGCTAACAGTGGTAGAGCATATGTAAAATGCATTGCAGATATAGTTAAATCTTATGGCTGGCAAAGAGTAATAGCCATCTATGAAGATGATGCCTATGGTGGAGAACAAGGGATGCTAGCCCTGCTATCTGAGGCCCTCCAAGATGCAAATTCAATGATTGAGTACAATTTTGTTCTTCCACCAATTTCTTCTTTGAATGATCCAAGAGGAGTAGTGCAAGAAGAGCTGCTTAAGTTAATGAATACACAACAATCGCGAGTGTTTATCGTGCTGCAATCATCACTAGAGATGTCGATTCACTTGTTCAGAGAAGCTTCAAATATAGGACTTGTGGATAGAGATTCAGTTTGGATAATCCCAGAGAGCATAACCAATCTAATTGACTCCATCAACAAGTCTTCCATTTCATACATGGAAGGAGCTATAGGAATTAAGAACTACTACTCTGAAGGAAGCAACAAGTACCAAGATTTTGAGGCTCAGTTTCAGAGAACTTTCTGGCCAAGAAACCCCGAAGAAGATAACCGAAAGCCTGGATTTTTTGCTTTGCAAGCATATGATAGCATTAACATTGTGACTCAAGCACTAGACAGAATGGCCAATAGCAATAGCAGCACAAAGACCTTACTAAAAGAAATACAATCAAGCAATTTTTCTGGTTTAAGTGGCCATATTGAATTTGAAGATGGAAAACTGCTGCAGAATCCTATCTTGAGGGTAGTAAATGTGGTTGGGAAGAGTTACAAGGAATTGTGCTTTTGGACTCAGCAACATGGATTCTCCACAAGCTTCCATGCAGGAAAAGATGGTGGAAATTATAACCATGTTTCAGATTCAGAATGCTTCAGTGGTGTACTTTGGCCTGGGAATTTGCATAGGACACCAAAGGGATGGAAAATGCCTACAAAACAAAAACCTATGCGAATCGCGGTCCCAGGCAGAACTACATTTTCCAGGTTTGTCAAAGTTGGTTATGGCAAGAATCGAAATCTCGATAAGTATGATGGATTCTGCATTAAGATTTTTGAGCAGGTGCACAAACATTTGGGGTATGATCTACCCTTTCAGTACCATGCTATCAATTGCACCTATCCTGATTTGGTTCAATTAGTCTATAACAAGACTTATGATGCTGTTGTTGGGGATATAACCATACTAGAGGAAAGATTGCCATATGTGGACTTCACTGTGCCATATGCAGAATCAGGATTGTCAATGTTAGTTCCAGCAAAGTCTGAAGAATCAGCATGGATGTTCACCAAGCCATTCACCTGGCAACTTTGGACAGTTACAGGAGCCATCCTGATCTACACAATGGTAGTGGTTTGGCTACTTGAGAAAGAACCTAATCCAGAGTTTCATGGCAATTGGAAGAGCCAGATCTGCACTGCTCTTTGGTTTACCTTCTCCTCTTGTTCTTTGCTCACAGTTAGGGAGAAAATGTATCGAAAGTTAACTCGCGTGGTGATGGTGTCATGGCTCTTCCTAGTTCTGATTCTGAATTCAAGCTACAATGCAAGTCTTTCTTCAATGCTCACTGTGAAACAGCTGCAGACAAATGTCACAGACATTGAGTGGTTGAAGAAGAACAACATGAAGATTGGTTGTGATGGTGACTCATTTGTAAGAAATTACCTAGTGGATGTAGAGAGGTTCAAGCCAGAGAACATTATCAACATAACCATTGAAGACAAATATATTGATGCATTTGCAAATGGTAGCATAGTAGCTGCATTTCTTGAATTACCCTATGAAAAAGTCTTCATTAGTGAATACTGTGATGGATACACTGCCTCCACTCCCAGAGCTAGATTTGGAGGATTAGGATTTATGTTCCAGAAAGGGTCCCCAGTGACAAGAGATGTTTCCAGAGCTATATTACATCTGTCAGAAAACGGAGAGCTGAAGAAGCTGGAAGAGGAATGGTTGTTGAGTGCATCACAGAAATGCTCCAACAACATGACCTCCAACGGCATGGAAAGCTTGAGTCTGAGAAGCTTGTGGATTCTATTCGTCATTCCGGTGTCACTTCCACTATTTGTCTGCTACTATCAGCAATCCAATGTAACCGCAGCAGCAGCGGCGCCAGCAGTAGGAGTGGTAGTATCTGCGCGTTCACGCACAAGAGGAAGAAAGCCACTCGCGCCAATTGGAAGAGGCGGAGCTGCACGCCGCATAAGTTCCAAGCCGCTCAGACTCACAGTCACAGCAATGAGAGCCGTTGTTCAGCGAGTTGCCTCCGCATCCGTCGAGGTTGAAGGCCGCATCGTCTCCGAGATCGGCCCCGGACTCCTCGTCCTTGTCGGAATCCACGACTCTGATTCAGAAGCCGACGCCGATTACATATGCAGGAAGGTCTTGAATATGAGGTTGTTCCCGAATGAAAATACAGCAAAAGCATGGGACCATAGCGTGATGCAGAAACATTATCAAGTTCTGCTAGTGAGTCAGTTTACCTTGTATGGATTCCTCAAGGGTAACAAGCCAGATTTTCATGTTGCTATGCCTCCACAGAAAGCAAAGCCCTTCTATGCTTCTTTAGTTGACAAGTTCAGGAACGCCTATAACTCAGATGCTATCAGGGATGGTGTATTTGGAGCGATGATGAAGGTAACTTTGGTTAATGATGGACCAGTTACCATGCAGCTTGATTCACAATCGTCCAAGAATACTTCTGACACCGCAGAATCTTGA 3108 0.426 MIWLFFFLVFTNANSHEAKNEGSKVISVGAIIDANSRVGKEQKVAMEIAAQRYNNTSRTYKLSLHFQNSTMDPISATIVAEEMIRMQKVQVILGLHTWPEAALVAEIGSRFQVPTISYAEPSITPPLMSIRWPFSVRMANSGRAYVKCIADIVKSYGWQRVIAIYEDDAYGGEQGMLALLSEALQDANSMIEYNFVLPPISSLNDPRGVVQEELLKLMNTQQSRVFIVLQSSLEMSIHLFREASNIGLVDRDSVWIIPESITNLIDSINKSSISYMEGAIGIKNYYSEGSNKYQDFEAQFQRTFWPRNPEEDNRKPGFFALQAYDSINIVTQALDRMANSNSSTKTLLKEIQSSNFSGLSGHIEFEDGKLLQNPILRVVNVVGKSYKELCFWTQQHGFSTSFHAGKDGGNYNHVSDSECFSGVLWPGNLHRTPKGWKMPTKQKPMRIAVPGRTTFSRFVKVGYGKNRNLDKYDGFCIKIFEQVHKHLGYDLPFQYHAINCTYPDLVQLVYNKTYDAVVGDITILEERLPYVDFTVPYAESGLSMLVPAKSEESAWMFTKPFTWQLWTVTGAILIYTMVVVWLLEKEPNPEFHGNWKSQICTALWFTFSSCSLLTVREKMYRKLTRVVMVSWLFLVLILNSSYNASLSSMLTVKQLQTNVTDIEWLKKNNMKIGCDGDSFVRNYLVDVERFKPENIINITIEDKYIDAFANGSIVAAFLELPYEKVFISEYCDGYTASTPRARFGGLGFMFQKGSPVTRDVSRAILHLSENGELKKLEEEWLLSASQKCSNNMTSNGMESLSLRSLWILFVIPVSLPLFVCYYQQSNVTAAAAAPAVGVVVSARSRTRGRKPLAPIGRGGAARRISSKPLRLTVTAMRAVVQRVASASVEVEGRIVSEIGPGLLVLVGIHDSDSEADADYICRKVLNMRLFPNENTAKAWDHSVMQKHYQVLLVSQFTLYGFLKGNKPDFHVAMPPQKAKPFYASLVDKFRNAYNSDAIRDGVFGAMMKVTLVNDGPVTMQLDSQSSKNTSDTAES 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90721g00015 1035 Pfam Ligand-gated ion channel 782 811 IPR001320 GO:0015276|GO:0016020
Stsc90721g00015 1035 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 813 IPR015683 -
Stsc90721g00015 1035 Gene3D - 454 553 - -
Stsc90721g00015 1035 Gene3D - 147 315 - -
Stsc90721g00015 1035 Pfam Receptor family ligand binding region 43 381 IPR001828 -
Stsc90721g00015 1035 FunFam Glutamate receptor 145 314 - -
Stsc90721g00015 1035 SUPERFAMILY Periplasmic binding protein-like II 422 782 - -
Stsc90721g00015 1035 SMART GluR_14 446 783 IPR001320 GO:0015276|GO:0016020
Stsc90721g00015 1035 Gene3D - 21 146 - -
Stsc90721g00015 1035 FunFam D-aminoacyl-tRNA deacylase 876 1027 - -
Stsc90721g00015 1035 Hamap D-aminoacyl-tRNA deacylase [dtd]. 876 1023 IPR003732 GO:0002161|GO:0005737|GO:0051499
Stsc90721g00015 1035 Pfam D-Tyr-tRNA(Tyr) deacylase 877 1022 IPR003732 GO:0002161|GO:0005737|GO:0051499
Stsc90721g00015 1035 CDD GluR_Plant 443 781 - -
Stsc90721g00015 1035 Gene3D - 683 786 - -
Stsc90721g00015 1035 CDD Dtyr_deacylase 876 1023 IPR003732 GO:0002161|GO:0005737|GO:0051499
Stsc90721g00015 1035 Gene3D - 554 682 - -
Stsc90721g00015 1035 Gene3D - 320 448 - -
Stsc90721g00015 1035 NCBIfam D-aminoacyl-tRNA deacylase 876 1023 IPR003732 GO:0002161|GO:0005737|GO:0051499
Stsc90721g00015 1035 CDD PBP1_GABAb_receptor_plant 27 402 IPR044440 -
Stsc90721g00015 1035 SUPERFAMILY Periplasmic binding protein-like I 23 436 IPR028082 -
Stsc90721g00015 1035 FunFam Glutamate receptor 554 685 - -
Stsc90721g00015 1035 Pfam Bacterial extracellular solute-binding proteins, family 3 470 781 IPR001638 -
Stsc90721g00015 1035 SUPERFAMILY DTD-like 875 1023 IPR023509 -
Stsc90721g00015 1035 Gene3D - 876 1029 IPR023509 -
Stsc90721g00015 1035 FunFam Glutamate receptor 440 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90721g00015 Stsc-Chr90721 90740 96506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90721g00015 26 811 Ion Channels AT2G29120 33.944 7.21e-135 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90721g00015 - - aip:107623836 1453.34