Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90720g00011 ATGGAGGATCCTAGCTTTCTCCAACAATGGCACTTAGGCTCTATTGATACTACTTGTACTACTTTAGCTGCTGCTGCTTTTGGAGATAGCCTGCAAAAGAATAATCCATTATTCTGTAATTCACCAAACTTGATGATGAACTCCAAGATTTCCATGATGGAAACTACTTCACCAACTACAGTGATTGATGAAAGACCAGCAAAACAGCTCAGAAGTAACAACAACACTACTAATTGGGGTAGTCACAATAATAACAAGACACCAGAGTCACACTTTGGTTCTTTCTCAAATAATAATATTCTCTCATTTGTTGATAACACAAGTAATCATCATCATCATCATCATCACCATCAATTGGGGTTAGCATCAGTGAAGCCTAAGGTTGAGATTATGAGTGGTAGTCCTAACAACATAGAAAATAGCCCTGCTGAGATGTTGATCTCTCAAGGAACAACCTTGTTGGGGACTAATAATAATAATAATAATAATCATCAAAGCTATCTATTCAAAGCATCACCATGCCATGAGATTAAGAACTTTGGAGCACGTCCTAATAATAACTATAAGCTTTCTTCTCATCAACCTCATGATCACATCATTGCTGAGAGAAAGCGTAGAGAGAAGCTCAGCCAGAGGTTCATTGCTCTATCTGCCCTTGTTCCTGGCCTCAAAAAGATGGACAAAGCTTCTGTTCTGGGAGATGCTATAAAGTACTTGAAACAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAAGAAGAAGAAGACCGTGGAATCAGTGGTGATTGTGAAGAAATCTCAGTTATGTAATAATGATGATGATGAAGGCTCTTGCTCTTCAGAGACTGAGGCACTACCTGAAATTGAAGCAAGATTTTGCGAAAGAAATGTGCTGATAAGAGTTCACTGCGAGAAGAATAAGGGTGTTATTGAGAAAACAATCACTGAAATTGAGAAACTCCATCTCAAAGTTATCAATACCAGTGCCTTAACTTTTGGGACTTTTGCCCTTGACATAACCATCATTGCTCAGATGGATATTGAATTTTCCATGACAGTGAAGGAACTTGTTAAGAATCTACGTTCAGCGTTTTCAACTTTCATGTGA 1113 0.3836 MEDPSFLQQWHLGSIDTTCTTLAAAAFGDSLQKNNPLFCNSPNLMMNSKISMMETTSPTTVIDERPAKQLRSNNNTTNWGSHNNNKTPESHFGSFSNNNILSFVDNTSNHHHHHHHHQLGLASVKPKVEIMSGSPNNIENSPAEMLISQGTTLLGTNNNNNNNHQSYLFKASPCHEIKNFGARPNNNYKLSSHQPHDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQMQEKVSALEEEQKKKKTVESVVIVKKSQLCNNDDDEGSCSSETEALPEIEARFCERNVLIRVHCEKNKGVIEKTITEIEKLHLKVINTSALTFGTFALDITIIAQMDIEFSMTVKELVKNLRSAFSTFM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90720g00011 370 Gene3D - 192 265 IPR036638 GO:0046983
Stsc90720g00011 370 CDD bHLH_AtNAI1_like 197 268 - -
Stsc90720g00011 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 254 IPR036638 GO:0046983
Stsc90720g00011 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Stsc90720g00011 370 Pfam Helix-loop-helix DNA-binding domain 198 243 IPR011598 GO:0046983
Stsc90720g00011 370 SMART finulus 199 248 IPR011598 GO:0046983
Stsc90720g00011 370 Coils Coil 232 259 - -
Stsc90720g00011 370 PANTHER BHLH TRANSCRIPTION FACTOR 45 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90720g00011 Stsc-Chr90720 55467 57308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90720g00011 196 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 57.778 3.49e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90720g00011 HLH 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90720g00011 - - aip:107624263 510.375