Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90720g00009 ATGGGGTGGGAGGTTAGGTATGAGATTGCATTGGGTGCTGCTAGAGGGTTGGAGTATCTGCACCATGGTTGTGTTAGACCAGTTATTCATAGGGATGTCAAGTCCAGTAACATCTTGCTTGATGAGGAATGGAAGCCAAGGATTGCTGATTTTGGTCTTGCCAAGATTGTTCATGGAGGAGCAGGAAATTTGACTCATGTCATTGCTGGCACACTTGGATACATGGCTCCAGAATATGCCTACACTTGTAAGGTGACAGAGAAAACTGATGTATACAGCTTTGGGGTAGTGCTAATGGAGCTAGTAACTGGGAAGAGGCCTATAGAGGCAGAGTTTGGGGAGAGCAAGGACATTGTGTATTGGGTATGCAGCAAGATGAGGAGCAAAGAGGAAGCTCTTGAGTTGGTGGATTCCACCATAGCAAAGCATTTCAGAGAAGATGTCATGAAGGTGTTGCGGATCGCAACACTATGCACGGCGAAGATGCCATCTTCAAGACCCTCCATGAGAATGGTTGTCCAAATGCTGGAAGAGGCAGACCCTTGTGCTCTCACCAACATAGTAACCACACATGATTAA 579 0.4646 MGWEVRYEIALGAARGLEYLHHGCVRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVHGGAGNLTHVIAGTLGYMAPEYAYTCKVTEKTDVYSFGVVLMELVTGKRPIEAEFGESKDIVYWVCSKMRSKEEALELVDSTIAKHFREDVMKVLRIATLCTAKMPSSRPSMRMVVQMLEEADPCALTNIVTTHD 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90720g00009 192 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 179 - -
Stsc90720g00009 192 SUPERFAMILY Protein kinase-like (PK-like) 2 177 IPR011009 -
Stsc90720g00009 192 ProSitePatterns Serine/Threonine protein kinases active-site signature. 28 40 IPR008271 GO:0004672|GO:0006468
Stsc90720g00009 192 Gene3D Transferase(Phosphotransferase) domain 1 1 186 - -
Stsc90720g00009 192 ProSiteProfiles Protein kinase domain profile. 1 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90720g00009 192 FunFam Leucine-rich repeat receptor-like protein kinase 1 191 - -
Stsc90720g00009 192 SMART serkin_6 3 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90720g00009 192 Pfam Protein kinase domain 8 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90720g00009 Stsc-Chr90720 41805 42767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90720g00009 1 192 Receptor kinase-like Gene Family AT1G09970 67.692 1.12e-89 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc90720g00009 Pkinase 6.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90720g00009 - - lja:Lj4g3v1120510.2 332.413