Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90718g00019 ATGGAGGAAATACAGTCTCAATCGGATGCATATCGGTCTTCTTCATCGTCGGCGAGTAGCCCGGCGAGTAGGGTGCCATCAAGTCACTTCTTCTACCTTAGGAAACCGGGTTCTCTTCAACAACCAATCTCATTCGAGGACTCACCTGAATGGGGGGAAGACACTGATGTTGAAGCTAGAGCTGATGAAGGAGTAGGAGGAGACACTATCAATGTCGCAACCTCGGCTTCACCTTCACTTTCTAAGCTCAATAGTGGTTCCTTGGCATCTCCATATGGTTCATATATATTGGAGGGTGCAGCTCTTCCTAACAAGATTTCGGGCGCTTCGGTTGTGTGGAGAGATTTGACTGTTACTATAAAGGGCAAAAGGAAGTACTCTGATAATGTTATTAAGAGTTCAACTGGTTTTGCCTTACCTGGTACAATGACAGTGATTATGGGACCTGCTAAATCGGGGAAGTCAACGTTGCTACGCGCCATTGCAGGAAGATTGCATCCTTCAACCAGGACTTATGGCGAAGTGTTTGTGAATGGGGCGAAATCACACTTGTCCTATGGATCATATGGCTTTGTGGAGAGAAAGACCACTCTGATTGGATCGCTTACCGTGAGAGAGTTTTTGTACTATTCGGCTCTGCTTCAACTACCAGGATTCTTGTTTCAGAAAAAGAATGTGGTAGAGGAAGCTATCCAAGCAATGTCTTTAGGTGATTATGCAAATACACTTATTGGTGGACATTGTTATACAAAGGGCCTCTCCGGCGGCGAGAGAAGACGTGTTAGCATTGCGAGAGAGCTCGTGATGAGACCACAAATCCTATTTATAGATGAACCACTTTATTGTCTAGACAGTGTCTCAGCACTTCTAATGATGGTTACACTGAAGAAACTTGCAAGCAGTGGTTGCACTCTTATCTTTACCATTTACCAGAGCAGCACAGAAGTCTTTGGCCTTTTTGATCGAATATGCCTTCTTTCGAATGGAAATACTTTGTTCTTTGGAGAAACATTAGCTTGCTTGCAGCACTTCTCAAATGCTGGATTTCCATGTCCTATCATGCAAAGTCCTTCGGATCACTTTCTGCGTGCAATCAATACAGATTTTGACAGGATCATTGCAATGTGTAAAAACTGGCAGGATGACAATGGAGAGTTTTCTTCAGTCAACATGGACACAGCTGTGGCTATACGCACACTCGAAGCAACATATAAATCATCTGCAGATGCAGCTGCTGTTGAAAATATGGTTATGAAACTCACAGAAAAGGAAGGTCCATCTCTGAAATACAAAGGCAAAGCCAGCGCTGCTACTCGCATAGCGGTCTTGACATGGAGGTCTTTATTGGTTATGTCAAGGGAGTGGAAGTATCACTGGATTCGTCTCGTTCTCTGTATGCTTCTTACACTTTGCATTGGTACTATATTTTCTGGCTTGGGGCACTCGCTGTCTTCGGTCGGGACTAGAGTGACAGCAATTTTTGTATTTGTGTCATTCTTTTCGCTTCTAAGCATCGCTGGCGTGCCGGGACTTATTAAAGAAATCAAGATATATGCATGTGAAGAATCCAACCAGCATTCAAGTGCACTAGTATTTTTACTTGGACAACTCTTGTCCAGCATACCATTCCTTTTCCTCATTTCGATTTCATCGAGTCTCGTTTTCTACTTCCTAGTAGGGCTGAGAGATGAATTCAGCTTCTTAATGTACTTTGTGCTCAACATTTTCATGTGTCTTTTAGTAAGTGAAGCACTCATGCTACTTGTTGCTACTTTATGGCAAGATATCTTCTGGAGTTTCTTAACACTTTTGTGCATTCAGGTAGTGATGATGCTTTCTGCTGGCTATCTTCGAATCCGAAACGATTTGCCTGGACCAGTGTGGATATATCCAATGTCATACATATCCTTTCATACATACTCTATTCAGGGACTATTGGAGAATGAGTACCTAGGAAGCACCTTTTCAATTGGGGAGGTGAGGAACATATCAGGATTTCAAGCTCTCCAAAACATCTATGACATCTCTTCTGACACCAATTCAAAGTGGTCAAATTTACTGGTTTTGTTTCTCATGGCAGTTGTTTACCGTTTTCTTGTCTTCATTTTATTGTGCAGAAAATCATCTCTGCCTTTTAGTTGTTGTAGGTGTAAAAGAGTAGATACAGAATTTACTACCTGA 2181 0.4237 MEEIQSQSDAYRSSSSSASSPASRVPSSHFFYLRKPGSLQQPISFEDSPEWGEDTDVEARADEGVGGDTINVATSASPSLSKLNSGSLASPYGSYILEGAALPNKISGASVVWRDLTVTIKGKRKYSDNVIKSSTGFALPGTMTVIMGPAKSGKSTLLRAIAGRLHPSTRTYGEVFVNGAKSHLSYGSYGFVERKTTLIGSLTVREFLYYSALLQLPGFLFQKKNVVEEAIQAMSLGDYANTLIGGHCYTKGLSGGERRRVSIARELVMRPQILFIDEPLYCLDSVSALLMMVTLKKLASSGCTLIFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQDDNGEFSSVNMDTAVAIRTLEATYKSSADAAAVENMVMKLTEKEGPSLKYKGKASAATRIAVLTWRSLLVMSREWKYHWIRLVLCMLLTLCIGTIFSGLGHSLSSVGTRVTAIFVFVSFFSLLSIAGVPGLIKEIKIYACEESNQHSSALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSFLMYFVLNIFMCLLVSEALMLLVATLWQDIFWSFLTLLCIQVVMMLSAGYLRIRNDLPGPVWIYPMSYISFHTYSIQGLLENEYLGSTFSIGEVRNISGFQALQNIYDISSDTNSKWSNLLVLFLMAVVYRFLVFILLCRKSSLPFSCCRCKRVDTEFTT 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90718g00019 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 111 353 IPR003439 GO:0005524
Stsc90718g00019 726 SMART AAA_5 140 330 IPR003593 GO:0016887
Stsc90718g00019 726 FunFam ABC transporter G family member 3 104 348 - -
Stsc90718g00019 726 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 105 708 - -
Stsc90718g00019 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 347 IPR027417 -
Stsc90718g00019 726 ProSitePatterns ABC transporters family signature. 253 267 IPR017871 GO:0005524|GO:0016887
Stsc90718g00019 726 Pfam ABC-2 type transporter 440 650 IPR013525 GO:0016020|GO:0140359
Stsc90718g00019 726 MobiDBLite consensus disorder prediction 1 25 - -
Stsc90718g00019 726 Pfam ABC transporter 140 280 IPR003439 GO:0005524
Stsc90718g00019 726 CDD ABCG_EPDR 108 335 - -
Stsc90718g00019 726 Gene3D - 104 348 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90718g00019 Stsc-Chr90718 94019 97398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90718g00019 138 314 Calmodulin-binding Proteins AT2G36910 25.668 3.28e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90718g00019 - - jcu:105628040 1118.99