Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90718g00007 ATGGGAAGAGCTCCATGCTGTGACAAAGCAAATGTGAAGAGAGGGCCATGGTCACCAGAGGAAGACTCAAAGCTCAAAGAATACATAAACAAGCATGGCACTGGTGGCAATTGGATTGCTCTCCCTCAAAAAGCTGGTCTGAAGAGATGTGGGAAAAGTTGCAGACTGAGATGGCTTAACTATCTTAGGCCAAACATTAAGCATGGTGAATTTTCTGAAGAAGAAGACAGAATCATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAATTACTGGAACACTAAGCTCAAGAAGAAGCTCATCTCTGGATTCCTTCCTCCAAATTCTTCTTCTTCTATTAATAATCAAAGAAAACAACAACAAGCTCCATTTCCATCATCATCATCATCATCAATGTATATGGATCAATATTATGGGACAGGCCTTGTTGATCCTATTTCACTTCCTTCAACTGAATACTATGCAAGCACAACAACAACAACAAACTCAGTCCCATTTTATTACAATCAAGTAGGAGAATCCATTATTTTTAGCCCCAGCAGCATGCAACAAAATTATCAAATGTTTGTTGGAAGTGAAGCTGCTACTAGCTGCAGTTCCTCTGATAATGGTAGCAGTATCAAGCAAGAGGAAATTGGGTATCATCATCAAGGATCATACAACAACATTGCATTTAATAGTGATCATCATCATGAGTTTCTTGTTATGCCTACTAGTAGTTTCAATAATAATAATAATAGCATAGTTAATTATGATGGTGGTGATAATAATGTTATTAGTCAATGGAGTACTGAAAAGTCAACATCATCAAGTGGTTATTATTATGATCTTGAGGATATTAAGCAATTGATTAGTGTTAGCAGTGTTGATGAAATCAAGGGTGAGGAGGAGGACAAATCTATGTACAATTACTACTACTACTGA 975 0.3754 MGRAPCCDKANVKRGPWSPEEDSKLKEYINKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSEEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLISGFLPPNSSSSINNQRKQQQAPFPSSSSSSMYMDQYYGTGLVDPISLPSTEYYASTTTTTNSVPFYYNQVGESIIFSPSSMQQNYQMFVGSEAATSCSSSDNGSSIKQEEIGYHHQGSYNNIAFNSDHHHEFLVMPTSSFNNNNNSIVNYDGGDNNVISQWSTEKSTSSSGYYYDLEDIKQLISVSSVDEIKGEEEDKSMYNYYYY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90718g00007 324 Gene3D - 69 141 - -
Stsc90718g00007 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc90718g00007 324 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc90718g00007 324 SMART sant 13 64 IPR001005 -
Stsc90718g00007 324 SMART sant 67 115 IPR001005 -
Stsc90718g00007 324 Gene3D - 7 68 - -
Stsc90718g00007 324 PANTHER OS09G0431300 PROTEIN 1 297 - -
Stsc90718g00007 324 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc90718g00007 324 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc90718g00007 324 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc90718g00007 324 CDD SANT 16 62 IPR001005 -
Stsc90718g00007 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc90718g00007 324 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc90718g00007 324 CDD SANT 70 113 IPR001005 -
Stsc90718g00007 324 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90718g00007 Stsc-Chr90718 43355 44743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90718g00007 1 132 MYB Transcription Factor Family AT5G57620 83.333 8.09e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90718g00007 Myb_DNA-binding 8.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90718g00007 K09422 - gmx:100779919 308.145