Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90717g00013 ATGAATAGAGGCGTTGTTCAAAGCTCGCCGGTGCAACAAATGATGGCGGCCGGAAACCCTAACTGGTGGAACATGAATAACATGAGGCCTCCTCTTCCACAACCTCCTCCTTTCTTGTCTACTACTACTCCTAATAATTCTTCAAACTTTCCCACCCAATATTCTTCTTCTTCTCCTTCACTTGCTTTGCCTCCTTCTTCTTGGCATGAAAATCAAGAACTTCCTGAGTCATGGAGCCAGCTACTCATGGGTGGACTTGTGGCTGAAGAAGATCATCATCATCAAATGCTAAGTCATCACCATCATCATCATCATCATCAAGCTCCAAATAATAATGCTTCTCTTGTTGATGTTAAGCAAGAAAGTTCAGTTAACAGCTATGTATATGGCCATGGTGGTGGAAATAATGAAGAACTTCAGCCATCAAAGGGTGCATCTTGGTCTCCGAATTCATGTGTCACAAGCTTCAGCAGCAACATGCTTGATTTTTCAAGCAGTAATAATAATAATGATAAGACTAATGTTGATGCAAGGCATCCACCACCACCACCAGATAGATCATCTGAGTGTAACAGCAGTGCAAGTGGTGGTGGGGCAATGAAGAAAGCTAGGGTTCAACCTTCCACAACTACTCAATCCACCTTCAAGGTCAGGAAGGAGAAGTTAGGTGACAGAATTACTGCACTTCATCAGCTGGTTTCCCCATTTGGGAAGACTGACACAGCCTCAGTGTTGTTAGAAGCTATTGGTTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGTTTACCTTACTTGAGTAATGGATCAGGGAACACAAGGCATCAACAATATTCTGTTCATCAGGGAGAGAAAAATTGTTTATTCCCTGAAGACCCCGGTCAGCTACTGCATGAAAACTGCTTGAAGAGGAAAGCACCTACTTGTGAGAAGGATTCTCAAGAAGTGGCTAAGAAGGACCTAAGGAGCAGAGGGTTGTGTTTGGTTCCAGTTTCATGCACACTTCAAGTTGGAAGTGACAATGGTGCAGACTATTGGGCTCCTGCACTTGGTGGGGGTTTTCGGTAG 1071 0.437 MNRGVVQSSPVQQMMAAGNPNWWNMNNMRPPLPQPPPFLSTTTPNNSSNFPTQYSSSSPSLALPPSSWHENQELPESWSQLLMGGLVAEEDHHHQMLSHHHHHHHHQAPNNNASLVDVKQESSVNSYVYGHGGGNNEELQPSKGASWSPNSCVTSFSSNMLDFSSSNNNNDKTNVDARHPPPPPDRSSECNSSASGGGAMKKARVQPSTTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLSNGSGNTRHQQYSVHQGEKNCLFPEDPGQLLHENCLKRKAPTCEKDSQEVAKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPALGGGFR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90717g00013 356 MobiDBLite consensus disorder prediction 41 72 - -
Stsc90717g00013 356 MobiDBLite consensus disorder prediction 163 217 - -
Stsc90717g00013 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
Stsc90717g00013 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 77 338 - -
Stsc90717g00013 356 MobiDBLite consensus disorder prediction 28 72 - -
Stsc90717g00013 356 Gene3D - 211 267 IPR036638 GO:0046983
Stsc90717g00013 356 FunFam transcription factor bHLH68 isoform X1 213 266 - -
Stsc90717g00013 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 267 IPR036638 GO:0046983
Stsc90717g00013 356 MobiDBLite consensus disorder prediction 126 149 - -
Stsc90717g00013 356 CDD bHLH_AtbHLH_like 214 263 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90717g00013 Stsc-Chr90717 109726 115625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90717g00013 1 297 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 45.480 3.49e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90717g00013 - - gmx:100785156 403.675