Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90717g00010 ATGACCACAGCCGTCACCGCCGCCGAGATCCTCCGCCACACCATCGCCTTCCTCTCTGATGTCATTTCCAACCGCGATCTTCGCCACCGCCTCGTCTCCATCCTCCTCCGAGACACTACCTCCGCCGCAATTTCCGACGAGTCTGCCGTGAAACTCGCCGGAGATACTCTTGAAAGCGCGATCACGCTCTCCAATGTCGCCTCCCGCTCCTGTTCCCTTTCCCTTGCCGAGAAGCTCCTCCTCCCTCTGTCCGAACACCACGACCACCCGCTTCCTTTCTTCCTCCTCTCACTCGTCCGCACCCTCCACAACCGCCACCTCGATGCCGCCGTGTCCCTCCTCCGTGTCTTCCGTTCTAACCCTTCCCTTGCTCGATCGGAGATTGCCCCGGTCCTCTACGACCGCCTGTTCTCCCCGCAGCTACTCTCCGTGTTCCGGTGGCTGCTGGATCGGAGAGCGCAGATCCTCTCATCATCTTCGGATTTGGAAGACGCTGCTACTCACTCGCTGTCGAAGGTGAGCGAGGAGCAGGCATCCAAACTGAGGGAGCTGGAGAAGGAGTACGAGGAGATTCTCGATGAGAATTGCAGGGTTGTTGCGGCGAGTTTCGAAGAGGTTTTGGCCAGCGAGAATCAAAATGCGTCCATCACTCCGCCGTTGCTGGCGCGCAAGGGCTCCGCGGAAGGCAGCGAAGCCGAGAACAATGTGGAGGAGGACGAGGAGGAGCAGTTAGTGACGGAGGATACTGAAATAACCGCTTTTAAGAGCGGACACTATGATAACCCAATATGGAGCGAAAGGGAAGAAGCATCCATTGAGTTTTTGAGCAGTGGTTCTTGCAGCAATTCCTCGTACGCACCGTTTTATCCACGAAGAGTCTCTGCCACAATCCTCAAACCCCAAAACACTTCACAAAACTTGCCACCACTCGCTCATGAAACCGAGTCTTCAATGGTTGACAAGACTTTGACTAGTTCCACCTCAGAATCTGAAGCAGAAACAGAGATTGCTACTGCTAGTTCAACTCCGAAGAAGACACCGAATCCGGTTCGAACCGGAAACAAATCCTTGTCTACTACTCCCAAAATCCTTGAACCACAAAAATCTGCAAGATGTTTGAAACCAACACCCTATTTAATAAACTTAGCTGATGAAGCAGAATCTTCTTTGGATAAGAATTTGCCTTGTTCAAATTCAGAATCTGAAGCAGAAAGTGAGGAAAAGGACGAAAAGATATCACTACTGGAGCCTCAGAAATTCCAAACCCCAAAACAGAAGAAAAATATCTGTTCAGGATCCATGTGTTCTCCAGATTGTAACATGGAAGATGAACATGTGCCTCCAGAGGACTTTGTGTGTCCATTAACAAGTAACCTATTTGATGATCCTGTGACCATTGAGACAGGACACACATTTGAACGCCATGCTATTGAAGAATGGCTTAAAAGGGGCAACTTAACTTGTCCCATCACTCGAAAGAAGCTGCGAAAGACTCGCATACCGAAAACAAATCACGTTCTCAAACAAATAATCTCAAGCTGGAAAGAACAAAATCTCAATTCAGTAGCCGCAATGCCATGTGATAGTCCACATGAAGATACTGATGAGCCAAAACTGGAGTCTTCAACTTCTCCTAATAGTGTCATATCAGAGGGAACGCTTGAGGGAATGATGAGTGAGTTGCGCAAAGCAATCAACAAACTGTACATGTCAGAGGTGCTTGAGGAATCTGAAATGGCTGTGCTTCAAATTGAGAAGATTTGGAAAGAATTGAACCTAATAGTTGTTGATATTCATAGCATGCTATCAAAACCTCCTATCATCAATGGATTCATGGGGGTGCTTCTTAACTCTGTTGATCCAAAAGTGTTGCAAGCAGCAGTTTTCTTGTTAACTGAGATGGGTTGTGGAGACAGTAGTGTTATTCAAACGCTTAGCCGTGTCGACACTGATGTAGAATGGATCATGACTCTTTTCAAGAAAGGTGTAAAAGAAGCTGTTGTTTTGATGTATCTCCTTAAACCTTCCACTGTTATTCTTTCAGATGCAGCAATAGTGGAGGCTCTCATTGCAGTTGCAAATATGAAAGAGGAAGAATTTCTAAGTATGTGTTTGAGTCCCAAAACAGCTGCAGTGCTTTTACTTGCTCAGGTTATTGGAAGCAGTGAAGAGAGCATTGCATCTTCAGTTGCTCAGGCTGTGTTATCCGAAAGAGCGATCGAAGCTATAGTAGGCAGTTTGGGAGCAGAGTGGGCAGAGGAGAGGATTGCGGCGGTTGAGATCTTGTTAAAATGCATGCAAGAAGATGGTACTTGCAGGAATATCATTGCTGATAAGGCACAATTATCTACTTTCTTGGAAAGCCTTTTAGGTGCAACTGAGGGAGAACTTTTCAAGATAGTTAAATTTTTATCTGAATTGGTAAAACTGAATAGGAGAACACTCAGTGAACAAATCCTTCACATTATAAAGGAAGAAGGCCCTTTAAGCACAATGCACACTCTCCTCATTTCTCTGCAGATAGCTCATAAATTCCATTTTCCAGTAGTGGCTGGCTTCTTACTCCAACTTGATCTTCTGGAGGAGCAAACAAAGATGAGTATATACTCTGAAGAGGCAATAGATACTCTTATCTCATGCTTGAGAAAGATTGATTACCCTGCTGTCCAATTAGAAGCTGCCAAGATAATCGCGTCGCTGCAAGGGAGGTTCAACTATGCCGGAAAGTCTCTTAACCGAGAAGTCCTCCTCGAACGTGCCGGTCTTGACAGAAGCTACAACAATTTTCTACAGATGGACCAGATCAGCAACTTCAACGAAGGAATTGAAGCATCTATGAAAGAAGAGAATGCAGATGAGGATTGGGAAAGAAGAGTTGCATCAGTTCTAGTTAGCCATGACTGTGGTTTACTTTTCGAGGCTTTAGCAGATGGGTTGAAGAGTCAAAATGAAGAACTACGTTCTTCATGCTTTATATCAGCTACATGGCTCATATACATGCTCACTATTCTACCAGATACTGGAATACAAGGTGCAGCACGAGTCTTCTTTCTGAAGCAATTCATATTCATATTGAAATCTGCCGAGGATACTGAAGACAGAATCCTTGCCATGCTTGCTCTTAAGAGCTTTCTTCATTTTGATGATGGCTTACGTGATCTTACTTCCTATGCTAAGGATATCCTGAGAGCATTGAGAGAATTAGAGGGGTTCTCCCCTATGGCATCAGAAATTATGAAGGTTTTGGTTGAAGAACCTGAATCTAAAGCAGACATCTGGATTCACAAAGAGATAACTAAAGTAGACTGTAGTGGGAATGGGGAAGTTCTTTCTATCATTTGCTTTGAAGATAAAATCTTTTCAGGGCATTCAGATGGAACCATTAAGGTGTGGAAAGTAAAGGAAAGCAAACTCGATCTGATGCAAGAGAATAAAAGGCATACTAAGGATGTTACAAGCTTGGCAATTTCAGAATCCGGTGACAGATTATACAGTGGTTCACTTGATAGAACTGTGAAGGTCTGGTCCATTGAAATGGCTGCAATACATCATGTACAAGAATATGATATGAAGGACCACATTCATAATCTAGTTGTGACCAATACTATGTGTTGCTTCACTCCTCATGGAAGTGGCATCAAGGTTAAGTCATGGAATGGAGAATCTAAGTTGTTAAATTCTAATAAACATGTAAAGTGCTTGGCTCTTGTTCAGGGGAAATTATACTGTGGATGCCATGATAGTAGCGTTCAGGAGATTGATTTGGCCACAGGAAAAGTCATCAACATTCAAAGTGGTTCCAAAAAGTTACTTGGGAAAACAAATCCAATTCATGCACTCAAACTTCATGGCGAATTCATATACACTACTAGCTCTTACGTTGATGGATCTGTCATAAAGATATGGAACATATGCAACAATCGTATTAGTATGTTTGGATCACTGCAAAGTTCGTTGGAAGTGAGAGCAATGGCAGTGAGCTCAGAACTAATTTATTTGGGGTGCAAGGGAGGAGCTGTGGAAATTTGGGATACCAAAAAACACAGCAGAATTAACACATTGCACACCGGATCCAATTGTAGGGTTCTTTGCATGGCTTTCAATAGCAATGAGGACATTTTGGTAATTGGAACTTCCGATGGCCAAATTCAGGCATGGGGTGTCAAGTAA 4170 0.4412 MTTAVTAAEILRHTIAFLSDVISNRDLRHRLVSILLRDTTSAAISDESAVKLAGDTLESAITLSNVASRSCSLSLAEKLLLPLSEHHDHPLPFFLLSLVRTLHNRHLDAAVSLLRVFRSNPSLARSEIAPVLYDRLFSPQLLSVFRWLLDRRAQILSSSSDLEDAATHSLSKVSEEQASKLRELEKEYEEILDENCRVVAASFEEVLASENQNASITPPLLARKGSAEGSEAENNVEEDEEEQLVTEDTEITAFKSGHYDNPIWSEREEASIEFLSSGSCSNSSYAPFYPRRVSATILKPQNTSQNLPPLAHETESSMVDKTLTSSTSESEAETEIATASSTPKKTPNPVRTGNKSLSTTPKILEPQKSARCLKPTPYLINLADEAESSLDKNLPCSNSESEAESEEKDEKISLLEPQKFQTPKQKKNICSGSMCSPDCNMEDEHVPPEDFVCPLTSNLFDDPVTIETGHTFERHAIEEWLKRGNLTCPITRKKLRKTRIPKTNHVLKQIISSWKEQNLNSVAAMPCDSPHEDTDEPKLESSTSPNSVISEGTLEGMMSELRKAINKLYMSEVLEESEMAVLQIEKIWKELNLIVVDIHSMLSKPPIINGFMGVLLNSVDPKVLQAAVFLLTEMGCGDSSVIQTLSRVDTDVEWIMTLFKKGVKEAVVLMYLLKPSTVILSDAAIVEALIAVANMKEEEFLSMCLSPKTAAVLLLAQVIGSSEESIASSVAQAVLSERAIEAIVGSLGAEWAEERIAAVEILLKCMQEDGTCRNIIADKAQLSTFLESLLGATEGELFKIVKFLSELVKLNRRTLSEQILHIIKEEGPLSTMHTLLISLQIAHKFHFPVVAGFLLQLDLLEEQTKMSIYSEEAIDTLISCLRKIDYPAVQLEAAKIIASLQGRFNYAGKSLNREVLLERAGLDRSYNNFLQMDQISNFNEGIEASMKEENADEDWERRVASVLVSHDCGLLFEALADGLKSQNEELRSSCFISATWLIYMLTILPDTGIQGAARVFFLKQFIFILKSAEDTEDRILAMLALKSFLHFDDGLRDLTSYAKDILRALRELEGFSPMASEIMKVLVEEPESKADIWIHKEITKVDCSGNGEVLSIICFEDKIFSGHSDGTIKVWKVKESKLDLMQENKRHTKDVTSLAISESGDRLYSGSLDRTVKVWSIEMAAIHHVQEYDMKDHIHNLVVTNTMCCFTPHGSGIKVKSWNGESKLLNSNKHVKCLALVQGKLYCGCHDSSVQEIDLATGKVINIQSGSKKLLGKTNPIHALKLHGEFIYTTSSYVDGSVIKIWNICNNRISMFGSLQSSLEVRAMAVSSELIYLGCKGGAVEIWDTKKHSRINTLHTGSNCRVLCMAFNSNEDILVIGTSDGQIQAWGVK 1389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90717g00010 1389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1355 1389 - -
Stsc90717g00010 1389 SMART Ubox_2 450 514 IPR003613 GO:0004842|GO:0016567
Stsc90717g00010 1389 ProSiteProfiles Trp-Asp (WD) repeats profile. 1355 1389 IPR001680 GO:0005515
Stsc90717g00010 1389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 525 IPR013083 -
Stsc90717g00010 1389 ProSiteProfiles Trp-Asp (WD) repeats profile. 1144 1178 IPR001680 GO:0005515
Stsc90717g00010 1389 SUPERFAMILY RING/U-box 445 518 - -
Stsc90717g00010 1389 Gene3D - 1092 1185 IPR015943 GO:0005515
Stsc90717g00010 1389 SMART WD40_4 1211 1254 IPR001680 GO:0005515
Stsc90717g00010 1389 SMART WD40_4 1308 1344 IPR001680 GO:0005515
Stsc90717g00010 1389 SMART WD40_4 1257 1303 IPR001680 GO:0005515
Stsc90717g00010 1389 SMART WD40_4 1085 1132 IPR001680 GO:0005515
Stsc90717g00010 1389 SMART WD40_4 1347 1387 IPR001680 GO:0005515
Stsc90717g00010 1389 SMART WD40_4 1137 1176 IPR001680 GO:0005515
Stsc90717g00010 1389 MobiDBLite consensus disorder prediction 232 246 - -
Stsc90717g00010 1389 MobiDBLite consensus disorder prediction 401 415 - -
Stsc90717g00010 1389 CDD RING-Ubox_PUB 448 498 IPR045210 -
Stsc90717g00010 1389 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1388 - -
Stsc90717g00010 1389 SUPERFAMILY ARM repeat 559 1066 IPR016024 -
Stsc90717g00010 1389 Pfam WD domain, G-beta repeat 1145 1176 IPR001680 GO:0005515
Stsc90717g00010 1389 Pfam WD domain, G-beta repeat 1095 1132 IPR001680 GO:0005515
Stsc90717g00010 1389 MobiDBLite consensus disorder prediction 301 363 - -
Stsc90717g00010 1389 Pfam U-box domain 448 518 IPR003613 GO:0004842|GO:0016567
Stsc90717g00010 1389 Coils Coil 174 194 - -
Stsc90717g00010 1389 Gene3D - 1186 1389 IPR015943 GO:0005515
Stsc90717g00010 1389 ProSiteProfiles U-box domain profile. 446 521 IPR003613 GO:0004842|GO:0016567
Stsc90717g00010 1389 Gene3D - 599 801 IPR011989 -
Stsc90717g00010 1389 SUPERFAMILY WD40 repeat-like 1098 1388 IPR036322 GO:0005515
Stsc90717g00010 1389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1144 1178 - -
Stsc90717g00010 1389 MobiDBLite consensus disorder prediction 526 547 - -
Stsc90717g00010 1389 MobiDBLite consensus disorder prediction 218 246 - -
Stsc90717g00010 1389 MobiDBLite consensus disorder prediction 389 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90717g00010 Stsc-Chr90717 88624 94783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90717g00010 436 589 U-box Gene Family AT1G71020 34.194 1.18e-15 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90717g00010 - - lang:109342256 1524.61