Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90717g00007 ATGGACTCTCAACCCTCGCCGGAGAACAACACCTGGACCCTCCACACCCGACCACAAATCACCGCCAAATACCAAATCCTCCAACGGATTGGCTCGGGAGCATATGCTGACGTGTACCGTGGACGCCGTCTATCGGACGACTTAACGGTGGCGCTGAAGGAGGTCCACGACGCTCGATCGGCGCTCAGGGAAATCGAAGCTCTCAGGGTCCTTCAGGGCTCTGAAAACGTCGTCGTCATGCATGAGTTCTTCTGGATCGACGACGATGAACACGCCGTGATCGTGCTCGAGTTTTTCAGGACGGACCTCGCCGCCGTGATCGCGGAAGCTGGTGGCGGCGGCGGCGGTTTTGATGTCGGCGAGGTGAAGAAGTGGATGATGCAGGTGGTTAGAGGCGTGGATGCTTGCCATAGGAACATGATTGTCCATAGAGACTTGAAGCCTTCCAATTTCTTGGTTTCTGATCATGGAGTTCTCAAATTGGCCGATTTTGGACAGGCAAGGATAATTATGGATCCTGGATTGGATTCTACAGACGAGAACCCACCACCACCATATGAGCATGATTATGCTTCTTCAGCTCCGGAGAGCTCATCAATTGAACATCCTTCTTCAGAGGCTTTTCCTCATGACCAAGGAACCGTAAATCATGAAGAGTATTTCAGAGTTCTAGAAGAAATGAAAACCAGGAACACCATATATGACACTGATAAGGACACAAACATCCAAGATGGAAACACCTCTTGTCTTGCAACTTGCACATCAAGTAACACCGACGACGGCGATGACGATCTCTGGAAGGCGTCATTAACTTTTGAAGCAGCAGAGGAGGAAGAAAGGAGGAATGAACTCGATTGTTGCCTCACATCGCATGTTGGAACTCGTTGGTATAAGGCTCCTGAATTGCTCTGTGGATCCACGGATTACGGTTTAGGGGTTGATCTATGGTCATTAGGGTGTATATTTGCGGAATTGCTAACCTTGAAGCCTTTGTTTCCTGGAACATCTGATGTAGATCAATTGAGTAGGATCATTAGTGTGTTGGGGAACATTGATGGAGAATCTTGGCCTGGTTATTCTAAGCTTCCTGATTATGCAACAATGTCGTTTGGTAATGTGGAAAGGCCTATTGGTCTTGAAGAGTGCATGAAGAATTGTGGAAAGGATCAAGTGTCTATGGTAAAAAAACTTGTTTGTTATGATCCAGCTAAGAGGACCACAGCAATGGAGATCCTTCATGATAAGTTCTTTAGTGAAGAGCCTTGA 1266 0.4763 MDSQPSPENNTWTLHTRPQITAKYQILQRIGSGAYADVYRGRRLSDDLTVALKEVHDARSALREIEALRVLQGSENVVVMHEFFWIDDDEHAVIVLEFFRTDLAAVIAEAGGGGGGFDVGEVKKWMMQVVRGVDACHRNMIVHRDLKPSNFLVSDHGVLKLADFGQARIIMDPGLDSTDENPPPPYEHDYASSAPESSSIEHPSSEAFPHDQGTVNHEEYFRVLEEMKTRNTIYDTDKDTNIQDGNTSCLATCTSSNTDDGDDDLWKASLTFEAAEEEERRNELDCCLTSHVGTRWYKAPELLCGSTDYGLGVDLWSLGCIFAELLTLKPLFPGTSDVDQLSRIISVLGNIDGESWPGYSKLPDYATMSFGNVERPIGLEECMKNCGKDQVSMVKKLVCYDPAKRTTAMEILHDKFFSEEP 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90717g00007 421 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Stsc90717g00007 421 Pfam Protein kinase domain 24 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90717g00007 421 Pfam Protein kinase domain 276 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90717g00007 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Stsc90717g00007 421 ProSiteProfiles Protein kinase domain profile. 24 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90717g00007 421 FunFam Cyclin-dependent kinase F-1 15 110 - -
Stsc90717g00007 421 Gene3D Phosphorylase Kinase; domain 1 15 107 - -
Stsc90717g00007 421 MobiDBLite consensus disorder prediction 192 211 - -
Stsc90717g00007 421 PANTHER CELL DIVISION PROTEIN KINASE 23 420 - -
Stsc90717g00007 421 MobiDBLite consensus disorder prediction 172 212 - -
Stsc90717g00007 421 Gene3D Transferase(Phosphotransferase) domain 1 108 214 - -
Stsc90717g00007 421 Gene3D Transferase(Phosphotransferase) domain 1 222 421 - -
Stsc90717g00007 421 SMART serkin_6 24 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90717g00007 421 SUPERFAMILY Protein kinase-like (PK-like) 9 419 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90717g00007 Stsc-Chr90717 70054 72383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90717g00007 1 421 Core Cell Cycle Gene Families AT4G28980 53.968 3.67e-166 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Stsc90717g00007 Pkinase 1.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90717g00007 - - gmx:548056 531.946