Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90717g00004 ATGAAGGAAGCTACACCAAAGAAGCAAAAACAGTGCAATTGTAAACACTCCAAATGTTTAAAGCTATATTGTGAATGTTTTGCATCTGGAATATATTGCGATGGTTGCAATTGTGTGAATTGTTTCAACAATGTCGAAAATGAGGCTGCTAGACGAGAAGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCAAAAATTGCAAGCAGTCCCCATGGAGCACGTGACAGCAGGGAGGAGGCTGGTGAAGTTCTAATATTAGGAAAGCATAACAAGGGCTGCCATTGCAAGAAATCGGGGTGTCTCAAGAAGTACTGTGAATGTTTCCAAGCCAACATCCTCTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAGGCCTTGTTTCATGGAGATCAAAATAACATGACATATATTCAGCAGGCAGCAAATGCTGCCATAACTGGAGCAATTGGTACATCTGGTTATTCATCGCCTCCAGTAACCAAGAAAAGAAAAGGTCAGGAAATCTTCGTTGGGCAAACACCCAAGGAACCATCTGTTAGCAAGTTGGGACAACAGGTAAACCATGTCCGAAGTCCAGCTCCGTCTCCATCCTTGCCGTCCCTTCCAGGCACTCGTGCTGGAACTGCAACACTAGGTCCTTCAAAATTTTCATACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACTTGAAAGAGCTTTGCTCAGTTTTGGTGCTGCTATCTGGACAAGCTGCAAAGACACTTACGGACCAGAAAAATTTAATGGAAAAGCATACAGAAGATCAGACAGAAACTTCGCTCGCCTCTTCAAATCAGTCACAATTACCGAATCAAAAGGAAGGTGATGTTGAGAAAGCTATGGCTGATGATTGTTCGAGTGCAAACCAAGCAGATAAAATCAGCCCGGACAATTCTAGTTCGGATGGTGCTGATGTCCCGAAAGGGAGGCCAATGTCTCCCGGGACGTTAGCTTTGATGTGTGACGAGCAAGATACGTTCATGACAGCTGCCTCTCCAGTTGGCACAATCGCACATGGCTGCAACACATCCTCGCAATTTCCTTACGGACAAGGAATGACAGAGGTCTATGCCGAGCAAGAAAAGATTGTATTAACAAAGTTTAGGGATTTCCTTAATAGAGTGATCACCATGGGAGAAATAAACGAAACAAAGTGTTCGTCGTTAGCTAGAAGCGAATTGGAGAGCCAGAAGGATCCAATCAATAATGGCCCTGGAAATACGACTACCGAGAGTTTGCTTCAGCAGCAGGGTGCCACTAGCAATGGTGTCGCCAAATCCGTTGTTCCACCTAAGGCCGCAGCAGCTTCGGCTTCACCGGCCCCTGGCCATAATAATGTTCCTGAAAATGGAGAAAATAAGCAAAACAGCGAAAAATAG 1440 0.4451 MKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGARDSREEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNMTYIQQAANAAITGAIGTSGYSSPPVTKKRKGQEIFVGQTPKEPSVSKLGQQVNHVRSPAPSPSLPSLPGTRAGTATLGPSKFSYRSLLADIIQPQHLKELCSVLVLLSGQAAKTLTDQKNLMEKHTEDQTETSLASSNQSQLPNQKEGDVEKAMADDCSSANQADKISPDNSSSDGADVPKGRPMSPGTLALMCDEQDTFMTAASPVGTIAHGCNTSSQFPYGQGMTEVYAEQEKIVLTKFRDFLNRVITMGEINETKCSSLARSELESQKDPINNGPGNTTTESLLQQQGATSNGVAKSVVPPKAAAASASPAPGHNNVPENGENKQNSEK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90717g00004 479 ProSiteProfiles CRC domain profile. 8 132 IPR005172 -
Stsc90717g00004 479 MobiDBLite consensus disorder prediction 278 293 - -
Stsc90717g00004 479 MobiDBLite consensus disorder prediction 269 335 - -
Stsc90717g00004 479 MobiDBLite consensus disorder prediction 184 221 - -
Stsc90717g00004 479 PANTHER TESMIN/TSO1-RELATED 3 401 IPR028307 -
Stsc90717g00004 479 MobiDBLite consensus disorder prediction 411 479 - -
Stsc90717g00004 479 MobiDBLite consensus disorder prediction 308 322 - -
Stsc90717g00004 479 MobiDBLite consensus disorder prediction 190 207 - -
Stsc90717g00004 479 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 95 129 IPR005172 -
Stsc90717g00004 479 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 9 44 IPR005172 -
Stsc90717g00004 479 SMART CXC_2 7 47 IPR033467 -
Stsc90717g00004 479 SMART CXC_2 92 133 IPR033467 -
Stsc90717g00004 479 MobiDBLite consensus disorder prediction 411 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90717g00004 Stsc-Chr90717 28362 34396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90717g00004 2 447 CPP Transcription Factor Family AT4G29000 61.947 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc90717g00004 TCR 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90717g00004 - - gmx:100818116 752.666