Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90715g00008 ATGGAACCTCGCGTAGCGAATAAGTTTCGGCTTGGCAGGAAGATCGGTGCCGGTTCTTTCGGGGAGATTTATTTAGGTACTAACGTTCAAACTAATGAGGAAGTTGCAATTAAGCTTGAAAATGTCAACACAAGACATCCTCAGTTGCTCTATGAGTCTAAGTTGTACAGGATTCTCCAGGGAGGAACTGGTATTCCAAATATCAAATGGTTTGGAGTAGAGGGAGAATACAATGTTCTAGTCATGGATCTCCTTGGACCTAGTCTGGAAGATCTATTCAACTTCTGTAGTAGAAAGCTCTCGCTAAAGACGGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTTATTCACTCTAAATCATTTCTACATCGGGATCTCAAACCAGATAATTTCCTCATGGGATTGGGAAGACGGGCTAATCAGGTTTACTGTATTGATTTTGGATTGGCGAAGAAATACAGAGATAGTACAACTCACCAACACATTCCTTACAGGGAAAACAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGTCGAAGAGATGATTTAGAGTCTCTTGGTTTTGTCTTGATGTACTTCCTAAGAGGAAGTCTCCCTTGGCAAGGACTTAGAGCAGGAACCAAGAAACAGAAGTATGAGAAAATCAGTGAAAAAAAAGTCACTACCTCAATAGAGGCCTTGTGTCGAGGTTATCCAACAGAATTTGCATCGTACTTCCATTACTGCCGCTCATTAAGGTTTGATGATAGGCCAGATTATGCTTACCTCAAGAGAATATTTCGTGACCTGTTTATTCGTGAAGGATTTCAGTTTGATTATGTGTTTGACTGGACTATCTTGAAGTATCAGCAATCACAACTAGCCACTCCACCAACACGTGCTGCTGCTCCTAATGCTGGAACTAGTTCTGGAATGCCTCCGCCTGTGACTGGTGCTGCTGATAGGCAGACAGGAGGGGAAGAAGGAAGAGCCCCTGGCCTGGTTTCAGTGGATTCAAGGCGATTAATGTCAGGGCCGATTTTAAATTCTGTAACTTCTTTAAAGCAGAAAAATGCGGTTGTCACTGATTCTGCTGTTAGTAAGGATGCTATGTTATCTAGCACCAATATCTTGGGCCAGTCAAGCGGATCAAGGCGAATTCCTGCTGGAAGCCGTGAGACTTTTGCTGCTGTTGAATCGGATCCTCGTACGCGTATGACAGATGCTAGCCCTGGAGCGGCAAACAGAGTTTCAAGTGTGCGAAAAAGTTCGCCTATTCGATCTTCGGATCCCAAGAAAGTAGTATCATCCGCTAAAGGTGCTTCGCATGTCAAGAATTATGAAAGTGCAGTTAAGGGTATGGAGCGTTTGCAGTTAGAAGATGATGAAAGGGCCCCTTAA 1419 0.4334 MEPRVANKFRLGRKIGAGSFGEIYLGTNVQTNEEVAIKLENVNTRHPQLLYESKLYRILQGGTGIPNIKWFGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDLKPDNFLMGLGRRANQVYCIDFGLAKKYRDSTTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLRAGTKKQKYEKISEKKVTTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAAAPNAGTSSGMPPPVTGAADRQTGGEEGRAPGLVSVDSRRLMSGPILNSVTSLKQKNAVVTDSAVSKDAMLSSTNILGQSSGSRRIPAGSRETFAAVESDPRTRMTDASPGAANRVSSVRKSSPIRSSDPKKVVSSAKGASHVKNYESAVKGMERLQLEDDERAP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90715g00008 472 CDD STKc_CK1_delta_epsilon 8 282 - -
Stsc90715g00008 472 MobiDBLite consensus disorder prediction 304 339 - -
Stsc90715g00008 472 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90715g00008 472 PANTHER CASEIN KINASE-RELATED 8 429 - -
Stsc90715g00008 472 MobiDBLite consensus disorder prediction 417 437 - -
Stsc90715g00008 472 MobiDBLite consensus disorder prediction 406 472 - -
Stsc90715g00008 472 FunFam Putative Casein kinase I 1 85 - -
Stsc90715g00008 472 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90715g00008 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Stsc90715g00008 472 MobiDBLite consensus disorder prediction 304 318 - -
Stsc90715g00008 472 Gene3D Transferase(Phosphotransferase) domain 1 1 316 - -
Stsc90715g00008 472 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90715g00008 472 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc90715g00008 472 SUPERFAMILY Protein kinase-like (PK-like) 6 290 IPR011009 -
Stsc90715g00008 472 FunFam Casein kinase I isoform delta-like 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90715g00008 Stsc-Chr90715 41037 47029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90715g00008 1 227 CBL-interacting serine-threonine protein kinases AT4G24400 27.092 4.85e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc90715g00008 Pkinase 5.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90715g00008 K02218 - gmx:100811567 754.207