Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90714g00007 ATGAAGAGAGTGATGATGGTAGAGGAGGGTAATGGTGGTGATTTAGACATGGTTAATTGCTTGATGTTACTAACAAAAGTTGGTGAAACCAAAACCAATGATCATCATCACCAATTGGAGGGTGGTGGCTTTAAGTGCAAGACATGTCATAGGAGATTCAAATCTTTTCAAGCACTTGGAGGACACAGAGCGAGTCATAAGAAGCTGAAGCAGATGATGGGCGCAGATCTTTCGTGCCAATTACCAACAAGTTCTTCATCATCATCATTGTCGTCGAACACGATGATGATGAAGAACAAGATGCACTCGTGCCCCGTTTGCGGGCTCGAGTTTGCAATTGGACAAGCCCTCGGAGGACACATGAGAAAGCATAGAAATTCAATAAATAGTAATGGTGGTGGTATGGTCATTCACGATGATCATGGTGCCGTAACCAATTCTACTAGTGATGATGATGGTAGTACTAGAACTGAGAGGTTTAATTTGTGCTTAGACTTGAATCTCATGCCATATGAGAATGATATCAAGCTTAACCTTAGGACTCCTATGTTGGATTGTTTAATTTGA 567 0.4145 MKRVMMVEEGNGGDLDMVNCLMLLTKVGETKTNDHHHQLEGGGFKCKTCHRRFKSFQALGGHRASHKKLKQMMGADLSCQLPTSSSSSSLSSNTMMMKNKMHSCPVCGLEFAIGQALGGHMRKHRNSINSNGGGMVIHDDHGAVTNSTSDDDGSTRTERFNLCLDLNLMPYENDIKLNLRTPMLDCLI 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90714g00007 188 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Stsc90714g00007 188 Gene3D Classic Zinc Finger 41 124 - -
Stsc90714g00007 188 PANTHER ZINC FINGER PROTEIN ZAT5 13 170 - -
Stsc90714g00007 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Stsc90714g00007 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Stsc90714g00007 188 Pfam C2H2-type zinc finger 102 125 - -
Stsc90714g00007 188 Pfam C2H2-type zinc finger 44 68 - -
Stsc90714g00007 188 SUPERFAMILY beta-beta-alpha zinc fingers 44 124 IPR036236 -
Stsc90714g00007 188 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Stsc90714g00007 188 SMART c2h2final6 102 124 IPR013087 -
Stsc90714g00007 188 SMART c2h2final6 44 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90714g00007 Stsc-Chr90714 34804 35370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90714g00007 14 179 C2H2 Transcription Factor Family AT5G59820 40.476 1.58e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc90714g00007 zf-C2H2_6 9.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90714g00007 - - adu:107476874 236.498