Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90714g00004 ATGCGCATAAACACTGCACTTACAAACGCCGCCACTCTTCTCTTCAAGAACTCTTCCCCTTTTTCTCCCTTCCAATTCCCGCGCCATTCATCTACCAATCTGTTCGTCGCAGGTTTGTCCTACGATACGAACGAAACCGTTCTAAGAGATGCATTTGAACAGTACGGTCAAATAATCGAAGTTAAAGTAATATGCGATCATGTCACTGGCAAATCAAAAGGTTATGGATTCGTTCGCTTTGTTGCTGAAACTTCAGCTGCTACAGGTCGTAAAGAAATGCATAAAAAGATTCTAGATGGGAGACGCATTCGTGTGTGTCATGCGCATAAACAAGCTAGCTAG 342 0.4327 MRINTALTNAATLLFKNSSPFSPFQFPRHSSTNLFVAGLSYDTNETVLRDAFEQYGQIIEVKVICDHVTGKSKGYGFVRFVAETSAATGRKEMHKKILDGRRIRVCHAHKQAS 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90714g00004 113 SUPERFAMILY RNA-binding domain, RBD 19 111 IPR035979 GO:0003676
Stsc90714g00004 113 SMART rrm1_1 33 106 IPR000504 GO:0003723
Stsc90714g00004 113 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 19 111 - -
Stsc90714g00004 113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Stsc90714g00004 113 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 111 - -
Stsc90714g00004 113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Stsc90714g00004 113 Gene3D - 16 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90714g00004 Stsc-Chr90714 15586 16202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90714g00004 27 105 Eukaryotic Initiation Factors Gene Family AT3G16380 40.506 5.33e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90714g00004 K13195 - gmx:100306540 139.813