Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90713g00007 ATGGCTTTCCGCGACCACCTACCACACGAAATTACTTTTCAGCCCTTCACGGACGAGCAACATTTAAATCAGAACAGAGACATGCAGAGGATGCTAACTCTCTCCGGCGCCGGCGGCGGAGGAGAGCCTCCGACGTGGATGAACAACGTCCGGCAGCAGAATTTCCTGCACCTTCAGCCGGAGGCAGAAAACGACGACGTTGGAGGCATGATGGCGGCGGCGGAGAAGAGCATGGATCATCATCGGAGCAAGCAGCAGCGGACGGCGACGGAAAGTAGCAACTTGGAGACGGAGGATATGGCGGAGTACAAGGCGGAGATCCTAGGACATCCGCTATACGAGCAGCTGCTGTCGGCACACGTGTCGTGTCTGAGAATTGCGACGCCCGTTGACCAGCTGCCGAGAATCGACGCGCAGTTGCAGGAGTCGCAGCGCGTGGTGGAGAAATACTCTGCGCATGGAAATAACGGTGTTGTTGATGACAAGGAGCTTGATCACTTCATGACACATTATGTTCTGTTGCTTTGCGCTTTTAAAGAACAATTGCAACAACATGTACGTGTGCATGCCATGGAAGCAGTGATGGCTTGTTGGGAGCTCGAGCAGTCTCTACAAAGCTTGACGGGTGTATCTCCGGGAGAAGGGACGGGTTCGACGATGTCGGACGACGAAGACGATCAGGCAGAGAGCAATGGCAACTTGTATGAAGGAAGCTTAGATGGCGGTGATAGTCTGAGCTTTGGGCCTCTTGTTCCAACTGAAACTGAAAGATCTCTAATGGAGCGTGTCCGCCAGGAACTCAAGCACGAGCTCAAACAGGGTTACAAAGATAAGATTGTTGACATAAGAGAAGAAATTCTGCGAAAGAGAAGAGCTGGGAAGCTTCCTGGGGATACCACCTCTCTCTTAAAAGCTTGGTGGCAATCTCATTCCAAATGGCCCTATCCAACGGAAGAAGACAAGGCCAGGCTGGTGCAGGAAACAGGTTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAGAGGAAAAGGAATTGGCATACTAATTCTTCGTCCTCTACTGGCTCCAAAAGCAAGCGCAAGAATAATAATAATAATAATAACAATAATAACAATACTAATAGTGGTGCAGGTGAAACAAGTAATAACCAGAGCTTCATGTGA 1167 0.4944 MAFRDHLPHEITFQPFTDEQHLNQNRDMQRMLTLSGAGGGGEPPTWMNNVRQQNFLHLQPEAENDDVGGMMAAAEKSMDHHRSKQQRTATESSNLETEDMAEYKAEILGHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLQESQRVVEKYSAHGNNGVVDDKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGSTMSDDEDDQAESNGNLYEGSLDGGDSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNSSSSTGSKSKRKNNNNNNNNNNNTNSGAGETSNNQSFM 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90713g00007 388 Pfam Homeobox KN domain 306 345 IPR008422 GO:0003677|GO:0006355
Stsc90713g00007 388 ProSiteProfiles 'Homeobox' domain profile. 286 349 IPR001356 GO:0003677
Stsc90713g00007 388 SMART HOX_1 288 353 IPR001356 GO:0003677
Stsc90713g00007 388 SUPERFAMILY Homeodomain-like 288 352 IPR009057 -
Stsc90713g00007 388 Pfam KNOX2 domain 158 208 IPR005541 GO:0003677|GO:0005634
Stsc90713g00007 388 SMART KNOX1_2 101 145 IPR005540 GO:0003677|GO:0005634
Stsc90713g00007 388 FunFam homeobox protein knotted-1-like 3 isoform X1 287 348 - -
Stsc90713g00007 388 Pfam KNOX1 domain 103 144 IPR005540 GO:0003677|GO:0005634
Stsc90713g00007 388 MobiDBLite consensus disorder prediction 343 388 - -
Stsc90713g00007 388 Pfam ELK domain 266 287 IPR005539 GO:0003677
Stsc90713g00007 388 MobiDBLite consensus disorder prediction 76 96 - -
Stsc90713g00007 388 Gene3D - 287 348 - -
Stsc90713g00007 388 SMART KNOX2_2 154 209 IPR005541 GO:0003677|GO:0005634
Stsc90713g00007 388 ProSiteProfiles ELK domain profile. 266 286 IPR005539 GO:0003677
Stsc90713g00007 388 SMART ELK_2 266 287 IPR005539 GO:0003677
Stsc90713g00007 388 MobiDBLite consensus disorder prediction 208 247 - -
Stsc90713g00007 388 CDD homeodomain 289 350 IPR001356 GO:0003677
Stsc90713g00007 388 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90713g00007 Stsc-Chr90713 35477 44094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90713g00007 101 369 Homeobox Transcription Factor Family AT5G11060 82.353 6.15e-165 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc90713g00007 KNOX2 9.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90713g00007 - - gmx:100816347 572.007