Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90713g00004 ATGGCTGGAATGCTTCCTGGTGTTGAATCTGCTAGAAGGAGAAGACTCCATGGGAGTAAAGGATGCTTGGATTTACCATCTTCTTCCATGGCTTCAACACATAACACTACAAGACGTTCTTCTTTGTGTTTATATGCTGCCAATCATGAGCCCCTTCATTCTCCTTCATCTTCTTCTGTACTGCATAGAAGCATGATCTACCAGCCTCAACCAGATTTGAATATGGTTGGAGAAGCCAGAGAAGCCAGAAGGAGATTGGATGATAAATTCAGATCACAAAGGAAATCGGAAAATAGAAGCATAAAGTGTGCTGAGAATAGAGCAGCAAGCATAGCAGAGTTGCACACAGAGGTATATGGTTCAAAGAGAATTGGTTCTAGAAGGTTCAGTTGGTCAAAATTGAGCTGGAAGGCCTCAGAACAAGAGGATTGTGCTGTTTGCTTGGAGTTATTCAAGGTTGGAGAGACTCTAATGCATCTACCTTGTGCCCATAGGTTCCATTCCAAATGCTTGAACCCATGGTTACAAAATAATTCACATTGTCCATGTTGCAGAACCGCAATTATTTAG 570 0.4193 MAGMLPGVESARRRRLHGSKGCLDLPSSSMASTHNTTRRSSLCLYAANHEPLHSPSSSSVLHRSMIYQPQPDLNMVGEAREARRRLDDKFRSQRKSENRSIKCAENRAASIAELHTEVYGSKRIGSRRFSWSKLSWKASEQEDCAVCLELFKVGETLMHLPCAHRFHSKCLNPWLQNNSHCPCCRTAII 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90713g00004 189 Pfam Ring finger domain 143 185 IPR001841 -
Stsc90713g00004 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 188 IPR013083 -
Stsc90713g00004 189 FunFam Zinc finger family protein 118 189 - -
Stsc90713g00004 189 SMART ring_2 144 184 IPR001841 -
Stsc90713g00004 189 PANTHER SI:CH211-59O9.10 62 188 - -
Stsc90713g00004 189 CDD RING-H2_PA-TM-RING 143 185 - -
Stsc90713g00004 189 ProSiteProfiles Zinc finger RING-type profile. 144 185 IPR001841 -
Stsc90713g00004 189 SUPERFAMILY RING/U-box 131 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90713g00004 Stsc-Chr90713 14210 15543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90713g00004 139 188 C3H Transcription Factor Family AT1G49850 60.000 1.63e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90713g00004 - - gmx:100527583 262.692