Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90712g00011 ATGGCCAAAACCAACACTAGTAGCAAAAACACAACCTTAACACCAAAACCAACATGGGTTTTGCCTTATAGAACAAAGAATCTGAATGAAGTCTACACTCTTGGAAGAAAACTGGGTCAGGGTCAATTTGGAACAACATATCTTTGCACACACAAAACCACAGGGTACAAATATGCCTGCAAATCAATCCCAAAGAAGAAGCTTTTCTGCAAAGAGGACTATGATGATGTTTGGAGGGAGGTTCAGATAATGCACCATTTATCTGAGCACCCTAATGTGGTGAGGATCCATGGAACCTATGAGGACATCTCAAATGTTCATCTGGTTATGGAGGTTTGTGAGGGTGGTGAGTTGTTTGATAGGATTGTGAAGAAGGGTCAATACAGTGAGAGAGAGGCTGCAAAGGTTATTAAGACCATTGTTGAGGTTGTTGAGTCTTGTCACTCTCTTGGGGTCATGCATAGAGACCTCAAGCCTGAGAATTTCTTGTTTGATAGTGTTGAAGAAGATGCAAAGCTTAAAGCCACTGATTTTGGTTTGTCTGTGTTCTACAAACCAGGTGAATCTTTTACTGATGTTGTTGGAAGCCCTTACTATGTCGCGCCGGAAGTCCTGCGGAAACATTATGGACCGGAGTTAGACGTGTGGAGTGCCGGCGTTATCTTGTATATCTTACTAAGTGGAGTGCCACCATTCTGGGCAGAAACTGAGCAAGGGATCTTCAAGCAGATTTTAATGGGAAAAATTGATTTCCACTCTGAGCCATGGCCTAGCATCTCTGACAGCGCGAAGGATCTAATCCGGAAAATGCTCAACCGAAATCCGAAAACAAGGCTCACAGCTCATCAAGTGCTTTGTCACCCGTGGATCGTTGATGACGATATTGCGCCAGATAAACCACTTGATTCTGCTGTCTTATCGCGCCTGAAGCAGTTCTCTGCAATGAATAAACTTAAGAAGATGGCGCTGCGCGTCATTGCTGAGAGGCTCTCTGAGGAAGAAATCGGTGGTCTGAAAGAGTTGTTTAAGATGCTTGATGCAGACAATAGTGGAACCATAACATTTGAAGAGCTAAAAGTTGGCTTAAAGAAAGCTGATATTGATAACAGTGGAACAATTGACTATGGTGAATTCATTGCTGCTACTGTTCACTTGAATAAGCTTGAGAGAGAGGAAAACCTGTTGTCAGCATTCTCTTATTTTGACAAAGATGGAAGTGGCTACATAACCATTGATGAGATTCAACAAGCTTGTAAGGAGTTTGGTTTGGTTGATGTCCACCTTGATGAAATGGTCAAGGAAATTGATCAAGACAATGATGGACAGATAGATTATGGCGAATTTGCTGCCATGATGAGAAAGGGAAATGTAGGTGGAGCAATCGGACGACGAACTATGAGAAGCACACTCAACTTCAGAGATGCTCTGAGAATCCCAAGTGATGGGTCTGATCAAGCTGGTGATGATCACCTTCAGTAA 1479 0.428 MAKTNTSSKNTTLTPKPTWVLPYRTKNLNEVYTLGRKLGQGQFGTTYLCTHKTTGYKYACKSIPKKKLFCKEDYDDVWREVQIMHHLSEHPNVVRIHGTYEDISNVHLVMEVCEGGELFDRIVKKGQYSEREAAKVIKTIVEVVESCHSLGVMHRDLKPENFLFDSVEEDAKLKATDFGLSVFYKPGESFTDVVGSPYYVAPEVLRKHYGPELDVWSAGVILYILLSGVPPFWAETEQGIFKQILMGKIDFHSEPWPSISDSAKDLIRKMLNRNPKTRLTAHQVLCHPWIVDDDIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMLDADNSGTITFEELKVGLKKADIDNSGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKEFGLVDVHLDEMVKEIDQDNDGQIDYGEFAAMMRKGNVGGAIGRRTMRSTLNFRDALRIPSDGSDQAGDDHLQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90712g00011 492 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 448 - -
Stsc90712g00011 492 ProSitePatterns Protein kinases ATP-binding region signature. 38 66 IPR017441 GO:0005524
Stsc90712g00011 492 FunFam CDPK-related kinase 3 24 192 - -
Stsc90712g00011 492 SUPERFAMILY Protein kinase-like (PK-like) 17 309 IPR011009 -
Stsc90712g00011 492 SUPERFAMILY EF-hand 329 453 IPR011992 -
Stsc90712g00011 492 CDD EFh 394 453 IPR002048 GO:0005509
Stsc90712g00011 492 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Stsc90712g00011 492 ProSitePatterns EF-hand calcium-binding domain. 346 358 IPR018247 -
Stsc90712g00011 492 FunFam Calcium-dependent protein kinase SK5 200 295 - -
Stsc90712g00011 492 Gene3D Phosphorylase Kinase; domain 1 34 117 - -
Stsc90712g00011 492 FunFam Calcium-dependent protein kinase 1 34 117 - -
Stsc90712g00011 492 ProSiteProfiles EF-hand calcium-binding domain profile. 427 458 IPR002048 GO:0005509
Stsc90712g00011 492 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Stsc90712g00011 492 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Stsc90712g00011 492 CDD STKc_CAMK 31 289 - -
Stsc90712g00011 492 FunFam Calcium-dependent protein kinase SK5 387 484 - -
Stsc90712g00011 492 Pfam Protein kinase domain 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90712g00011 492 ProSiteProfiles EF-hand calcium-binding domain profile. 333 368 IPR002048 GO:0005509
Stsc90712g00011 492 SMART efh_1 427 455 IPR002048 GO:0005509
Stsc90712g00011 492 SMART efh_1 337 365 IPR002048 GO:0005509
Stsc90712g00011 492 SMART efh_1 393 421 IPR002048 GO:0005509
Stsc90712g00011 492 Pfam EF-hand domain pair 392 453 IPR002048 GO:0005509
Stsc90712g00011 492 Gene3D Transferase(Phosphotransferase) domain 1 118 300 - -
Stsc90712g00011 492 Pfam EF hand 338 364 IPR002048 GO:0005509
Stsc90712g00011 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Stsc90712g00011 492 SMART serkin_6 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90712g00011 492 Gene3D - 301 456 - -
Stsc90712g00011 492 ProSiteProfiles Protein kinase domain profile. 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90712g00011 Stsc-Chr90712 106142 108830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90712g00011 20 489 EF-hand Containing Proteins AT4G09570 74.233 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc90712g00011 Pkinase 1.7e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90712g00011 K13412 - gmx:100805961 853.203