Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc90712g00005 | ATGTCGAGCTTCCACGTCGGCGGCAAGGTGGTTGACCGCGTCGATTTGCTGCGGAAGAAGCAACTGCCATGGCGCCTCGACGTTTGGCCTTTCGCTGTTCTCTACGGCGCATGGCTCGCCTCGATCCTCCCGAGTCTCGACTTCGTCGACGCCGCCATCGTTTTCGGCGGACTCGTTGCTCTCCATATCCTCGTTTGGCTTTTCACCGGCTGGTCCGTTGATTTCAAGTGTTTCGCGCATTACAGCAAGGTTAGGGATATTCACCAGGCTGATTCTTGCAAGATAACGCCGGCGAAGTTTTCAGGTTCGAAAGAGGTCGTGCCGCTCAGGTTTCGGAAAATTCCTGCAGGTTCTTCATCTGCTGCGGATCTGGAGGAGATTTACTTTGAGTTTAGAAAACAATGTTTCGTCTTTTCTAACGAGAAGGGAACCTTCTGCAAACTTTCTTATCCTACAAAGGAAACGTTTGGACATTATCTCAAGGGTACTGGGCATGGCTCTGAAGCTAAAATCCTTGCTGCTACAGAGAAATGGGGGCGGAATGTATTTGATTATCCTCAGCCAACCTTTCAGAAATTGATGAAAGAACATTGCATGGAGCCTTTTTTTGTTTTTCAGGTTTTCTGCGTAGGTCTCTGGTGTTTGGATGAATATTGGTATTACAGTTTGTTCACTCTATTTATGCTTTTTATGTTTGAGTCAACCATGGCAAAGAGTCGGTTGAAGACTCTTACTGAGCTAAGGCGTGTCAGAGTGGATAGTCAGATCCTTATGGTACATCGTGGTGGCAAGTGGGTTAAACTCTCTGGTACAGATCTTTTGCCTGGGGATGTTGTCTCTGTAGGACGCTCCTCTGGTCAGAATGGTGAGGAGAAGTCTGTACCTGCGGACATGCTTATATTGGCTGGAAATGCAATTGTGAATGAAGCTATTCTCACAGGCGAGTCTACTCCTCAATGGAAGGTTTCAATTATGGGTAGGGGAAGTGAGGAGAAGCTGTCCATAAGGCGAGATAAAAGTCACGTCTTATTTGGTGGAACTAAAATACTGCAGCACACTCCGGATAAGACCTTCCCTCTAAAAACGCCTGATGGTGGCTGTGTGGCTGTTGTGCTTAGAACGGGGTTTGAAACAAGTCAAGGAAAATTGATGCGAACAATCTTGTTCTCCACAGAAAGGGTAACTGCCAATAGCTGGGAAAGTGGATTGTTCATCTTATTCTTGGTTGTATTTGCTCTGATTGCTGCTGGTTATGTGCTTATGAAGGGGTTAGAAGATCCCACAAGAAGCAAGTACAAACTTATACTAAGTTGTTCACTTATTGTTACTTCTGTGATACCTCCTGAGTTGCCGATGGAGTTATCAATAGCCGTTAATACTTCCCTGATTGCATTGGCACGACGCGGTATTTTTTGCACAGAGCCTTTCCGAATACCATTTGCTGGAAAGGTTGATATATGTTGTTTTGACAAGACTGGGACACTGACATCTGATGACATGGAATTTTCTGGAGTTGTTGGATTGAATGAAACCACTGACTTGGAATCTGATATGAGTAGAGTGCCAGTGCGAACTGTGGAAATCCTGGCTTCTTGCCATGCTTTGGTTTTTGTCGATAATAAGCTAGTTGGTGATCCTCTTGAGAAGGCTGCACTTAAGGGAATTGATTGGGGTTATAAATCTGATGAGAAGGCTGTTCCAAAAAAGGGTAATGGCCAACCTGTCCAAATTGTTCAGCGGTACCATTTTGCATCTCACTTAAAACGAATGGCAGTTATTGTTCGCATTCAGGAGGAGTTTTTTGCCTTTGTGAAGGGTGCCCCAGAAATTATTCAAGATAGACTCATTGATGTACCACCATCATATGTTGAAACCTATAAGAAGTATACACGTCAAGGGTCTCGTGTTCTTGCTTTGGCCTACAAGTCTCTCCCTGACATGACAGTCAGTGAAGCCAGAGGCTTGGATAGGGATGTAGTAGAGAGTGGACTTACTTTTGCTGGTTTTGTGGTATTTAATTGTCCTATAAGGTCAGATTCGGCCGTTGTTTTATCTGAACTGAAAGGGTCTTCACATGACTTGGTGATGATTACTGGTGACCAAGCTTTGACTGCTTGCCATGTTGCAAGCCAAGTTCATATTATATCAAAACCTACCTTAATCCTTGGCCCAGCGAGTAATGGTGTGGGATATAAATGGATGTCCCCTGATGAGACTGTAAACATTCCCTACAGTGAGAAAGAGGTTGAGTCTTTATCGGAAACTCATGATCTCTGTGTTGGAGGTGATTGCTTTGAAATGTTGCAACAGTCATCGGCTCATCTTCGAGTTATTCCTTATGTGAAGGTGTTTGCTAGAGTTGCACCTGAACAGAAAGAACTTATCCTGACCACTTACAAGACAGTGGGACGTATAACTCTGATGTGTGGTGATGGAACCAATGATGTTGGGGCATTGAAACAGGCCCATGTAGGAGTTGCCCTTCTGAATGCAATGCCTCCAACTCAAAGTGGAAACTCCTCTAAAGAGTCAGCTGGGGAAGAAAGTTCAAAATCCGTCAAAACGAAGAAATCCAAGCCTGCACTTGAAGCACCTGGCAAGAGTGGAGAAGGAACTTCAAAAGCCACAGTTGCTTCCAAATCAGATCCTATTAACCGTCATCAGGCAGCTGTTGATATGCAACGACAGAAGCTCAAGAAGATGTTTGAAGAGCTTAACGAGGAAGATGGCCGGGCACCCGTTGTCAAGCTTGGTGATGCGTCAATGGCATCCCCCTTCACTGCAAAGCACGCATCTGTTGCTCCCACCACGGACATAATTCGTCAAGGTCGGAGTACCCTGGTGACAACCCTCCAGATGTTTAAGATTTTGGGCCTCAACTGCCTTGCTACTGCATACGTGTTGAGTGTCATGTATCTGGACGGCGTCAAACTAGGTGATGTGCAGGCCACAATAAGTGGTGTCTTCACTGCTGCTTTTTTCCTCTTTATCTCACATGCCCGCCCTCTTCCCACCCTCTCAGCCGAACGTCCACACCCAAATATCTTCTGTGCTTATGTTTTCCTTTCCCTTATGGGGCAATTTGCCATTCACTTATTCTTCCTGATCTCATCTGTGAAAGAGGCTGAAAAATACATGCCAGATGAATGCATTGAACCAGATGCAGATTTCCATCCCAACTTGGTCAACACTGTTTCATACATGGTCAGTATGATGCTTCAGGTTGCTACTTTCGCTGTGAACTACATGGGCCATCCCTTCAACCAGAGTATCTCAGAAAACAAGCCGTTCCGGTATGCCCTTATAGCCGCTGTTGGTTTCTTTACAGCGATTACATCTGATGTCTTCAGGGACTTAAATGACTGGTTGAAGCTGGTGCCACTACCAGTGGGATTAAGGGACAAGCTGTTAATATGGGCATTTCTAATGTTTTTGATATGCTACTCATGGGAGAGACTATTGAGGTGGGCCTTCCCTGGTAAGATCCCTGCATGGAAGAGGCGTCAACGGCATGCTGTATCAAACTTGGAAAAGAAGAAAGAGGTTTAA | 3549 | 0.4525 | MSSFHVGGKVVDRVDLLRKKQLPWRLDVWPFAVLYGAWLASILPSLDFVDAAIVFGGLVALHILVWLFTGWSVDFKCFAHYSKVRDIHQADSCKITPAKFSGSKEVVPLRFRKIPAGSSSAADLEEIYFEFRKQCFVFSNEKGTFCKLSYPTKETFGHYLKGTGHGSEAKILAATEKWGRNVFDYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRGGKWVKLSGTDLLPGDVVSVGRSSGQNGEEKSVPADMLILAGNAIVNEAILTGESTPQWKVSIMGRGSEEKLSIRRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCVAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVLMKGLEDPTRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLNETTDLESDMSRVPVRTVEILASCHALVFVDNKLVGDPLEKAALKGIDWGYKSDEKAVPKKGNGQPVQIVQRYHFASHLKRMAVIVRIQEEFFAFVKGAPEIIQDRLIDVPPSYVETYKKYTRQGSRVLALAYKSLPDMTVSEARGLDRDVVESGLTFAGFVVFNCPIRSDSAVVLSELKGSSHDLVMITGDQALTACHVASQVHIISKPTLILGPASNGVGYKWMSPDETVNIPYSEKEVESLSETHDLCVGGDCFEMLQQSSAHLRVIPYVKVFARVAPEQKELILTTYKTVGRITLMCGDGTNDVGALKQAHVGVALLNAMPPTQSGNSSKESAGEESSKSVKTKKSKPALEAPGKSGEGTSKATVASKSDPINRHQAAVDMQRQKLKKMFEELNEEDGRAPVVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPLPTLSAERPHPNIFCAYVFLSLMGQFAIHLFFLISSVKEAEKYMPDECIEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENKPFRYALIAAVGFFTAITSDVFRDLNDWLKLVPLPVGLRDKLLIWAFLMFLICYSWERLLRWAFPGKIPAWKRRQRHAVSNLEKKKEV | 1182 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc90712g00005 | 1182 | NCBIfam | P-type ATPase of unknown pump specificity (type V) | 45 | 1139 | IPR006544 | GO:0006812|GO:0016020|GO:0019829|GO:0140358 | |
| Stsc90712g00005 | 1182 | Pfam | haloacid dehalogenase-like hydrolase | 485 | 713 | - | - | |
| Stsc90712g00005 | 1182 | FunFam | Cation-transporting ATPase | 484 | 668 | - | - | |
| Stsc90712g00005 | 1182 | SFLD | p-type atpase | 469 | 945 | IPR044492 | - | |
| Stsc90712g00005 | 1182 | ProSitePatterns | Hypothetical cof family signature 2. | 809 | 831 | - | - | |
| Stsc90712g00005 | 1182 | Gene3D | - | 224 | 388 | - | - | |
| Stsc90712g00005 | 1182 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 494 | 678 | IPR023299 | GO:0000166 | |
| Stsc90712g00005 | 1182 | CDD | P-type_ATPase_cation | 170 | 1097 | IPR047820 | - | |
| Stsc90712g00005 | 1182 | PANTHER | CATION-TRANSPORTING ATPASE-RELATED | 12 | 1158 | IPR006544 | GO:0006812|GO:0016020|GO:0019829|GO:0140358 | |
| Stsc90712g00005 | 1182 | SUPERFAMILY | HAD-like | 483 | 835 | IPR036412 | - | |
| Stsc90712g00005 | 1182 | Coils | Coil | 884 | 908 | - | - | |
| Stsc90712g00005 | 1182 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 490 | 496 | IPR018303 | - | |
| Stsc90712g00005 | 1182 | SFLD | C1.7: P-type atpase like | 469 | 945 | - | - | |
| Stsc90712g00005 | 1182 | Gene3D | - | 483 | 668 | IPR023299 | GO:0000166 | |
| Stsc90712g00005 | 1182 | MobiDBLite | consensus disorder prediction | 847 | 863 | - | - | |
| Stsc90712g00005 | 1182 | SUPERFAMILY | Calcium ATPase, transduction domain A | 255 | 387 | IPR008250 | - | |
| Stsc90712g00005 | 1182 | FunFam | Cation-transporting ATPase | 669 | 844 | - | - | |
| Stsc90712g00005 | 1182 | Gene3D | - | 669 | 844 | IPR023214 | - | |
| Stsc90712g00005 | 1182 | PRINTS | P-type cation-transporting ATPase superfamily signature | 809 | 828 | - | - | |
| Stsc90712g00005 | 1182 | PRINTS | P-type cation-transporting ATPase superfamily signature | 488 | 502 | - | - | |
| Stsc90712g00005 | 1182 | PRINTS | P-type cation-transporting ATPase superfamily signature | 690 | 700 | - | - | |
| Stsc90712g00005 | 1182 | PRINTS | P-type cation-transporting ATPase superfamily signature | 308 | 322 | - | - | |
| Stsc90712g00005 | 1182 | FunFam | Cation-transporting ATPase | 226 | 388 | - | - | |
| Stsc90712g00005 | 1182 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 167 | 1159 | IPR023298 | - | |
| Stsc90712g00005 | 1182 | MobiDBLite | consensus disorder prediction | 831 | 886 | - | - | |
| Stsc90712g00005 | 1182 | NCBIfam | HAD-IC family P-type ATPase | 403 | 513 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Stsc90712g00005 | 1182 | NCBIfam | HAD-IC family P-type ATPase | 781 | 829 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Stsc90712g00005 | 1182 | Pfam | E1-E2 ATPase | 258 | 468 | - | - | |
| Stsc90712g00005 | 1182 | MobiDBLite | consensus disorder prediction | 832 | 846 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc90712g00005 | Stsc-Chr90712 | 63766 | 74571 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc90712g00005 | 1 | 1182 | Primary Pumps ATPases | AT5G23630 | 78.668 | 0.0 | 1928 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc90712g00005 | K14950 | - | gmx:100789385 | 2134.76 |