Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90710g00006 ATGAATATGGCTTCTCCCACCTCGGATTTCATGTTATCTGATTATCTATTGCTTGATGATGATGATGATCATGATGATGATCATCATCATCATTATCAAGAGTCTTTGTCACAGAGTACTGAACCATGGGAGCTTGCAGCAGCATCAAGCGATGCCAGTCACGGATTTCGTGGTGTAATAACCACCTCCAACAACAATAACAGCATAAAATGCAAAAATAATGCGAGTAACCGAAAGAAGCAGGTAGAAGGAGGAGGCCAAAGGGTGGTGTTCAGAACAAGATCGGAGGTAGAGGTCATGGATGATGGTTACAAATGGAGAAAGTATGGAAAGAAGTCAGTAAAGAACAGTCCCAATCCTAGGAACTATTACAAGTGCTCGAGTGCAGGATGTGGTGTGAAAAAGAGGGTGGAAAGAGATGCAGAAGACATGAGCTATGTGTTAACAAGTTATGACGGTATCCACAATCACCGAATCCGCTCTTCTAATAACTCCTACCACAATAATAATACTTCTCCATACTCCTTCTTTCACACTCCTCCTGCAAACTCATCATCCTCCAATTCTTAG 570 0.4193 MNMASPTSDFMLSDYLLLDDDDDHDDDHHHHYQESLSQSTEPWELAAASSDASHGFRGVITTSNNNNSIKCKNNASNRKKQVEGGGQRVVFRTRSEVEVMDDGYKWRKYGKKSVKNSPNPRNYYKCSSAGCGVKKRVERDAEDMSYVLTSYDGIHNHRIRSSNNSYHNNNTSPYSFFHTPPANSSSSNS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90710g00006 189 Gene3D WRKY domain 87 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90710g00006 189 FunFam WRKY transcription factor 57 86 160 - -
Stsc90710g00006 189 SUPERFAMILY WRKY DNA-binding domain 92 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90710g00006 189 ProSiteProfiles WRKY domain profile. 95 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90710g00006 189 MobiDBLite consensus disorder prediction 22 48 - -
Stsc90710g00006 189 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 36 178 IPR044810 GO:0003700
Stsc90710g00006 189 MobiDBLite consensus disorder prediction 162 189 - -
Stsc90710g00006 189 Pfam WRKY DNA -binding domain 101 158 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90710g00006 189 SMART WRKY_cls 100 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90710g00006 Stsc-Chr90710 38217 41035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90710g00006 73 174 WRKY Transcription Factor Family AT5G64810 59.804 1.02e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc90710g00006 WRKY 3.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90710g00006 - - gmx:100127396 152.14