Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90709g00013 ATGGAGGCAAGAGAAGCCATGAGCTCCGGGGTTACTGTGATTGGGGCCGAAGCTCCCTCGGCATATCATGTGGCACAAAGGAGTGAAGCTCCGAGCCAAGGTCCTGGCCCGGATGCAGCTACTAATGCAGTTCTTGGTGTTTCGCCAGTGAGTGTGGGAATGGATGGAACAACTGTTAAGAAGAAACGTGGTAGGCCTAGGAAATACGGGCCGGATGGGTCTGTTAATATGGCATTGTCACCATTGCCAATTTCTTCTTCGGCTCCTCCTTCCAACGAATTTTCGAGCATGCATTCAAGTGGAAAACGGGGGAAATCGCGGGGTATGGAGCACAAGCACTCGAAGAAATTCGGAGGAGGAGATATTCTTGGAGATTCCATGGGTACAAGCTTTATGCCCCATATCATTACTGTCAATGCCGGCGAGGACATCACGATGAAGGTTATATCGTTTTCTCAACAAGGACCACGAGCTATATGCATCCTATCTGCTACCGGTGGAATTTCAAATGTTACACTGCGTCAGCCTGATTCTTCGGGAGGCACTTTGACCTATGAGGGTCGTTTCGAGATACTTTCCTTGGCTGGATCATTCATGCCGACCGACAACGAAGGAACGAGAAGCCGGTCAGGTGGTATGAGTGTCACCTTGTCCAGCCCTGATGGCCGTGTCATAGGCGGCGGCGTTGCTGGTCTTCTTGTAGCTGCCAGTCCTGTGCAGGTGGTGGTTGGAAGTTTTCTGCCAAGCAACCAGCAAGAACCGAAACCGAAGAAGCACAAGCATGATTATGCATCTCCAGCAGCAGCTACCCCATCCATTGCAGTGTCCTCCGCACCACCGCCACCCTCAACTAACGGCGATAAAGAGGATGTCATGGGTGGACACGTGCTGCAACACAATCCTGGAATGTTCAACGCGAGCCTCACTCCTCCCTCTACGTTCCGAAGGGACAGCTGGGTTAACATGCATTCCATGCAGGACTCGATTAAATCCGCCACGGATATTAACATATCTTTGCCTGATAATTAA 1029 0.5102 MEAREAMSSGVTVIGAEAPSAYHVAQRSEAPSQGPGPDAATNAVLGVSPVSVGMDGTTVKKKRGRPRKYGPDGSVNMALSPLPISSSAPPSNEFSSMHSSGKRGKSRGMEHKHSKKFGGGDILGDSMGTSFMPHIITVNAGEDITMKVISFSQQGPRAICILSATGGISNVTLRQPDSSGGTLTYEGRFEILSLAGSFMPTDNEGTRSRSGGMSVTLSSPDGRVIGGGVAGLLVAASPVQVVVGSFLPSNQQEPKPKKHKHDYASPAAATPSIAVSSAPPPPSTNGDKEDVMGGHVLQHNPGMFNASLTPPSTFRRDSWVNMHSMQDSIKSATDINISLPDN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90709g00013 342 MobiDBLite consensus disorder prediction 248 290 - -
Stsc90709g00013 342 Gene3D - 133 262 - -
Stsc90709g00013 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 246 IPR005175 -
Stsc90709g00013 342 FunFam AT-hook motif nuclear-localized protein 1-like 133 264 - -
Stsc90709g00013 342 ProSiteProfiles PPC domain profile profile. 128 267 IPR005175 -
Stsc90709g00013 342 CDD DUF296 133 246 IPR005175 -
Stsc90709g00013 342 MobiDBLite consensus disorder prediction 79 102 - -
Stsc90709g00013 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 251 - -
Stsc90709g00013 342 MobiDBLite consensus disorder prediction 54 121 - -
Stsc90709g00013 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 315 IPR039605 GO:0003680
Stsc90709g00013 342 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90709g00013 Stsc-Chr90709 86294 89538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90709g00013 10 271 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.782 1.25e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90709g00013 - - gmx:100777213 465.692