Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90709g00008 ATGGCTTCCAGCAACATTCATCGAAACGGCGCCCAAAGAGGAATCATCAGCAACAAGTTCGATCGCCCTCTCAAACCACGCCACCGCCCTCCCTCTCCGGGATCCACCTTCCGCCGCAACTCCTCCGCCCCCGGCAGCGCCGACGCCGTGCCTGGAAGAGTTCGAGTGGCTGTGAGATTAAGACCACGAAATGCTGAAGAATTGATAGCAGATGCTGATTTTGCTGACTGTGTTGAACTGCAACCAGAGCTTAAAAGGTTGAAACTTCGTAGAAACAATTGGGATTCTGACACATACGAGTTTGATGAGGTGCTTACTGAATATGCATCACAGAAACGTGTCTATGAAGTTGTTGCTAAGCCAGTTGTTGAGAGTGTTCTTGATGGCTACAATGGCACTGTTATGGCTTATGGTCAAACTGGAACCGGGAAAACATTTACTCTCGGAAGTTTGGGGGAAGGAGACACCTCTGATCGTGGTATAATGGTTCGTTCCATGGAGGATATTTTTACCGAATTGTCTCCAGATACAGATTCCATCACTGTCTCGTATCTGCAGCTTTACATGGAGACTCTCCAGGACCTGCTTAACCCGGCTAATGATAATATTCCTATAGTGGACGATCCTAGAACTGGTGATGTATCTTTGCCTGGAGCAACTCTTGTAGAAATCAGGGACCAGCAGAGTCTTCTCGAGTTATTAAGAGTAGGGGAAGCTAATCGGATTGCTGCTAATACAAAGTTGAATACAGAATCTTCCCGTAGTCACGCTATTCTGATGGTATATATTAGGAGGTCCATCGTGGATAATGAAGATATTGAATCTAGTGAAAATGGTGGGGATACACCAAACTTTACTACTAAACCTTCAAAACCACTTGTTAGGAAGAGCAAGCTAGTTGTGGTGGATTTAGCTGGTTCAGAGCGTGTCCATAAGTCAGGAAGTGAAGGACACATGCTAGAAGAAGCCAAATCAATCAACCTTTCACTTAGTTCACTGGGAAAGTGCATTAATGCTCTAGCAGAGAACAATGCTCATGTTCCATTTCGTGATTCAAAGCTTACAAGGATGCTTCGAGATTCTTTCGGAGGTACAGCAAGGACATCATTGATTGTGACCATTGGCCCATCTCCACGTCATCGAGGAGAAACTTCTAGCACCATATTATTTGGCCAAAGGGCTATGAAAGTTGAAAATATGCTGAAAATTAAGGAGGAGTTTGATTATAAAAGCTTGTCTCGAAAGCTTGAGATGCAATTGGATAAGCTTATTGCAGAAAATGAAAGGCAGCAAAAAGGTTTTGATGACGAAGTTGAAAAAATAAACTTGGAAGCGCAATGTCGTATTGCTGAGGTTGAGAGGAATTTTGCAGATGCATTAGAGAAAGAGAGGTTGAAATGCCAGATGGAGTACATGGAACTGGTAAAGGAGCTGGAGCATAAATTAGTGTTAAATCAAGAAAGACATGAGTATAATCATTTTGGGGTTGATCGTGGTGAGGGACCTGCATCATCTTCTGCGGATGTTTCTGATCTCAAAATGTTGCTTGAAAAAGAAAGTAAGCAAAGAAAGGCAGCTGAAGAAGAGGTGGAACGTCTAAAAAGTCAGCTGGGGAAATATACACTATCAGAGGGAGGAGAGGATGTGGAGGTTATAAAGCTACGGAACCTCCTTGAGGATGAGGCTAATCAGAAAAAGAAGCTTGAAGAAGAGATAATAATATTAAGAAGTCAATTATTACAATTGAACTTCGAAGCTGACCAGATGAGAAGGTGTTTGGAAAGCGGTAGCTCAGGGAGCTCATTTCCCGCCAGTGATCCCTCCCTGACACAAGTTAGGCATTCCCAGCTCAAAGACACTGGGAATGGTCCAAAGTCTTCAGTCACTACACTCTTCGAACAAGTTGGATTGCAAAAGATTTTGTCATTGCTGGAGTCAGATGATGCCAATATGCGAATTCATGCTGTGAAAGTGGTGGCCAACCTAGCAGCTGAAGAGGCTAATCAAAAAAGAATTGTTGAATCTGGTGGTCTCACTTCCTTATTGATGCTTCTTAGAAGATATGAGGATGAAACTGTTCGCCGAGTGGCAGCTGGGGCAATTGCCAATCTGGCTATGAATGAAGCAAACCAAGAACTTATCATGGCAGAAGGAGGAATAACTCTCTTATCAATGACAGCATCTGATGCTGAAGATCCACAAACTCTTCGAATGGTTGCTGGGGCAATCGCTAACCTTTGTGGAAACGATAAAATATTGATGAAGCTGAGGTCTCAAGGAGGTATCAAGGCTTTACTGGGAATAGTTAGATGTGGGCATTCAGATGTTCTATCCCAAGTTGCACGAGGAATTGCTAACTTCGCAAAATGCGAATCTCGATCATCCAATCAGGGGATAAAAAGTGGTCGATCGTTCTTGATCGAAGATGGTGCACTACCTTGGATAGTACAAAATGCTAATAATGAGGCTGCACCCATCAGGCGTCATATTGAGCTCGCGCTTTGCCACTTAGCACAACATGAAGTGAATGCCAAGGACATGATTAGCGGAGGAGCTCTTTGGGAGATAGTCCGGATTTCAAGGGATTGTTCACGAGAGGACATTCGGAGTCTCGCTCGCCGAACTCTCAGTTCTATCCCGACATTCAAATCCGAACTGCGGCGACTGCGGATAGAATGTTGA 2682 0.44 MASSNIHRNGAQRGIISNKFDRPLKPRHRPPSPGSTFRRNSSAPGSADAVPGRVRVAVRLRPRNAEELIADADFADCVELQPELKRLKLRRNNWDSDTYEFDEVLTEYASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGSLGEGDTSDRGIMVRSMEDIFTELSPDTDSITVSYLQLYMETLQDLLNPANDNIPIVDDPRTGDVSLPGATLVEIRDQQSLLELLRVGEANRIAANTKLNTESSRSHAILMVYIRRSIVDNEDIESSENGGDTPNFTTKPSKPLVRKSKLVVVDLAGSERVHKSGSEGHMLEEAKSINLSLSSLGKCINALAENNAHVPFRDSKLTRMLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRKLEMQLDKLIAENERQQKGFDDEVEKINLEAQCRIAEVERNFADALEKERLKCQMEYMELVKELEHKLVLNQERHEYNHFGVDRGEGPASSSADVSDLKMLLEKESKQRKAAEEEVERLKSQLGKYTLSEGGEDVEVIKLRNLLEDEANQKKKLEEEIIILRSQLLQLNFEADQMRRCLESGSSGSSFPASDPSLTQVRHSQLKDTGNGPKSSVTTLFEQVGLQKILSLLESDDANMRIHAVKVVANLAAEEANQKRIVESGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMTASDAEDPQTLRMVAGAIANLCGNDKILMKLRSQGGIKALLGIVRCGHSDVLSQVARGIANFAKCESRSSNQGIKSGRSFLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAKDMISGGALWEIVRISRDCSREDIRSLARRTLSSIPTFKSELRRLRIEC 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90709g00008 893 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 676 719 IPR000225 GO:0005515
Stsc90709g00008 893 CDD KISc 53 395 - -
Stsc90709g00008 893 SMART arm_5 625 664 IPR000225 GO:0005515
Stsc90709g00008 893 SMART arm_5 665 706 IPR000225 GO:0005515
Stsc90709g00008 893 SMART arm_5 749 789 IPR000225 GO:0005515
Stsc90709g00008 893 SMART arm_5 707 748 IPR000225 GO:0005515
Stsc90709g00008 893 ProSiteProfiles Kinesin motor domain profile. 53 397 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90709g00008 893 Coils Coil 551 585 - -
Stsc90709g00008 893 PRINTS Kinesin heavy chain signature 129 150 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90709g00008 893 PRINTS Kinesin heavy chain signature 298 316 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90709g00008 893 PRINTS Kinesin heavy chain signature 347 368 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90709g00008 893 Coils Coil 509 543 - -
Stsc90709g00008 893 FunFam Kinesin-like protein 45 427 - -
Stsc90709g00008 893 PANTHER CENTROMERE PROTEIN E 53 653 IPR027640 GO:0003777|GO:0007018
Stsc90709g00008 893 Coils Coil 442 477 - -
Stsc90709g00008 893 Gene3D Kinesin motor domain 46 427 IPR036961 -
Stsc90709g00008 893 FunFam Kinesin-like protein 606 881 - -
Stsc90709g00008 893 Pfam Armadillo/beta-catenin-like repeat 668 705 IPR000225 GO:0005515
Stsc90709g00008 893 Pfam Kinesin motor domain 59 397 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90709g00008 893 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 635 677 IPR000225 GO:0005515
Stsc90709g00008 893 SUPERFAMILY ARM repeat 628 880 IPR016024 -
Stsc90709g00008 893 Coils Coil 413 433 - -
Stsc90709g00008 893 ProSitePatterns Kinesin motor domain signature. 297 308 IPR019821 GO:0003777|GO:0005524|GO:0007018
Stsc90709g00008 893 SMART kinesin_4 51 405 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90709g00008 893 MobiDBLite consensus disorder prediction 1 50 - -
Stsc90709g00008 893 MobiDBLite consensus disorder prediction 595 625 - -
Stsc90709g00008 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 432 IPR027417 -
Stsc90709g00008 893 Gene3D - 471 883 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90709g00008 Stsc-Chr90709 43741 52123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90709g00008 50 444 Calmodulin-binding Proteins AT5G65930 32.767 5.77e-47 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90709g00008 - K10396 gmx:100789455 1490.71