LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90708g00007	ATGGAAGCTAGTACCGGACTTTTTGCTGCCACCCATGACAACAATGATCTTGTCGTCATTCAAGGGCACGACGAGCCTAGGCCGGCGAAGAACTTAGATGGACAGCAATGCGAAATATGCGGAGACACGGTGGGATTAACAGTGGAGGGAGACTTGTTTGTAGCTTGCGAGGAATGTGGGTTTCCAGTGTGTAGGCCTTGCTATGAGTATGAAAGAAGGGAAGGGACTCAACTTTGTCCCCAGTGCCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTAGAGGGAGATGAAGACGAGGACGATGTGGATGATATAGAACATGAATTCAAAATGTTAGAAGAAAAGGAAGAGTTGCGCCAAAGGAAGAAAACCACCGGATATTATGATGATCACAATGCTAATTCACCATCCTTCGCCAAGGTGAATGGGGAGCTTCCTGTATCTACTTACCATGAAAAATCTGATGAGAAAGAGAGAGTGGATGACTGGAAGTTGAACCAAGGAAATCTTTGGCCTGAAACCGATGCTTCAGTTGATCCTGAAAAGGCCATAAAAGATGAAAGTAGACAGCCACTGTCAAGGAAGGTGGCCATACCATCCGGAAGACTCAGCCCTTACAGGATGATGGTTGCAGCCAGGCTGGTGATTCTGTTGCTATTCTTTCAGTACAGAATCTTCCACCCAGTACCTGATGCAATTGGACTCTGGTTCACATCTCTTGTGTGTGAAATTTGGCTTGCATTCTCATGGCTTCTTGATCAGATTCCTAAATGGTTTCCCATCAACCGCGAGACGTATATTGACCGTCTTTCAATCAGATTTGAACCGGAGGGCAAGCCTAATATGCTTTCTCCAATAGATATATTTGTCACTACGGTGGATCCGATGAAGGAACCTCCCCTAGTTACTGCCAATACAGTTCTTTCAATCTTGGCTTTGGATTACCCAGCTGACAAAATCTCATGCTACGTATCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACGGCTGAATTCGCTCGAAAATGGGTACCGTTTTGCAGAAAATACTCCGCTGAACCTCGAGCACCAGAGAAGTACTTCTCTGAGAAGATAGATTATATCAAGGATAAGCTTCAGCCTACATATGTAAAAGAACGTCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATTAATGCACTTGTGGCTAAGTCCATGAGAGTTCCTCCAGAAGGGTGGACAATGAAAGATGAGACACCATGGCCGGGAAACAACACCAACGATCATCCAAGTATGATACAAGTCCTTCTCGCTCGAGGCGGAGACCACCGCCCCGACCAACTTCCCTGTCTTGTATACATATCTCGTGAGAAAAGGCCGGCATTCCAACACCACAACAAAGCTGGTGCGATAAATGCCTTGCTTCGCGTATCAGCAGTGCTAAGCAATGCTCCGTTCGTGCTGAACTTGGATTGCAATCATTATGTTAATAACAGCAAAGTGATGCGTGAGGCCATGTGTTTCTTTATGGACATCCAACTTGGGAATGGCATTGGCTTTGTTCAGTTTCCTTTAAGATTTGACAGCCTTGACAGGAACGATCGTTATGCTAACAAGAACACTGTTTTGTTTGATATTAACCTGAGGTGCCTAGATGGAATTCAAGGACCTGTTTATGTTGGTTCAGCATGCATCTTCAGAAGGAAAGCAATATATGGTTTCGAACCACCAAAGGTGACGAAACCGCCGCGAATTGTTCAAGTGCACTCAAAACAGGATGAAAATGAAGAGGAGGATGCAGGAATAACAGAGGAAGACAAGCAGCTACTGAAATCAGAGATGAACTTTGAGAACAAATTTGGAAAATCATCACCTTTTGCTAATCCTTCATCAACAGAAGAAGAAGGTGGCATTGATGCTTCTTCCGGTCAGGCAGCCCTTCTCAAAGAAGCCATTCATGTCATGAGCTGTAAATACGAAGACAGAACTCTATGGGGACATGAGGTTGGAATGAGCTATGGATCTGTAGCTGCAGATACTCTTACAAGTTTCAAGTTGCATAGTCGTGGATGGAAATCGGTATACTGCATGCCGGAGAGAGCTGCATTCAGGGGGACAGCTCCTATCAACCTTACAGATAGACTTAACCAGGTGCTTAGATGGGCAGTTGGATCACTTGAGATTCTCTTCAGCCGCCATTGCCCGTTGTGGTATCACTTTAAGGAAGGAAAACTGAAGCTGCTACAAAGGATTGCCTATATAAACAGCACTGTCTACCCCTTCAGCTCCATACCCCTTTTGATATACTGTCTCATTCCTGCTGTATGCTTGCTCACTGATAAATTCATCACACCTTCGGTTGGGACATTCGCTAGTCTAGTCTTTATTAGTCTATTCATCACCATCTTTGCCTCAGCCATTCTCGAATTGAGATGGAGTGGTGTTAGCCTTGAGGAATGGTGGAGGAATCAGCAATTCTGGGTCATCGGAAGCGTGTCCGCACACATCTTCGCCGTCGTACACTGCCTAACGAAAGCCCTGCCCCTGGCAAGAAGCAATATCAACTTCACCACCGTCTCGAAGGCGCCGGACGAAGGGCAGTTCAACCAGCTATACACCATTAAATGGACTGCCCTACTTATACCTCCAACTACAATCATCATAATCAATCTTATTGGCATTGTGGCTGGCTTTACAGATGCCGTAAACAGTGGTGAACATTCTTGGGGAGCACTTATTGGGAAGCTCTTCTTCTCTTTTTGGGTTATTGTCCATTTGTATCCGTTCCTAAAAGGACTTATGGGTAGGCAGAACAGAACACCAACACTAATAGTCATATGGTCTGTGCTTTTGGCTTCTATCTTCTCCTTGGTTTGGGTTAGGATTGACCCTTTTGTGTTGAAAACAAAAGGACCAGACGCTAAGCAATGTGGAATCAGTTGTTGA	2952	0.4488	MEASTGLFAATHDNNDLVVIQGHDEPRPAKNLDGQQCEICGDTVGLTVEGDLFVACEECGFPVCRPCYEYERREGTQLCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKMLEEKEELRQRKKTTGYYDDHNANSPSFAKVNGELPVSTYHEKSDEKERVDDWKLNQGNLWPETDASVDPEKAIKDESRQPLSRKVAIPSGRLSPYRMMVAARLVILLLFFQYRIFHPVPDAIGLWFTSLVCEIWLAFSWLLDQIPKWFPINRETYIDRLSIRFEPEGKPNMLSPIDIFVTTVDPMKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFARKWVPFCRKYSAEPRAPEKYFSEKIDYIKDKLQPTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNTNDHPSMIQVLLARGGDHRPDQLPCLVYISREKRPAFQHHNKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNSKVMREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPVYVGSACIFRRKAIYGFEPPKVTKPPRIVQVHSKQDENEEEDAGITEEDKQLLKSEMNFENKFGKSSPFANPSSTEEEGGIDASSGQAALLKEAIHVMSCKYEDRTLWGHEVGMSYGSVAADTLTSFKLHSRGWKSVYCMPERAAFRGTAPINLTDRLNQVLRWAVGSLEILFSRHCPLWYHFKEGKLKLLQRIAYINSTVYPFSSIPLLIYCLIPAVCLLTDKFITPSVGTFASLVFISLFITIFASAILELRWSGVSLEEWWRNQQFWVIGSVSAHIFAVVHCLTKALPLARSNINFTTVSKAPDEGQFNQLYTIKWTALLIPPTTIIIINLIGIVAGFTDAVNSGEHSWGALIGKLFFSFWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDAKQCGISC	983

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90708g00007	983	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	191	950	-	-
	Stsc90708g00007	983	Coils	Coil	97	117	-	-
	Stsc90708g00007	983	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	277	380	IPR029044	-
	Stsc90708g00007	983	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	427	581	IPR029044	-
	Stsc90708g00007	983	MobiDBLite	consensus disorder prediction	622	642	-	-
	Stsc90708g00007	983	SUPERFAMILY	RING/U-box	22	105	-	-
	Stsc90708g00007	983	CDD	mRING-HC-C4C4_CesA	35	85	-	-
	Stsc90708g00007	983	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	20	110	IPR013083	-
	Stsc90708g00007	983	Pfam	Cellulose synthase	593	977	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Stsc90708g00007	983	Pfam	Cellulose synthase	288	586	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Stsc90708g00007	983	MobiDBLite	consensus disorder prediction	622	640	-	-
	Stsc90708g00007	983	Coils	Coil	386	406	-	-
	Stsc90708g00007	983	Pfam	Zinc-binding RING-finger	27	104	IPR027934	-
	Stsc90708g00007	983	FunFam	Cellulose synthase	19	110	-	-
	Stsc90708g00007	983	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	301	795	IPR029044	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90708g00007	Stsc-Chr90708	88628	95238	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90708g00007	1	983	Cell Wall Biosynthesis	AT5G17420	64.403	0.0	1366

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90708g00007	K10999		-	gmx:100777270	1613.2