Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90707g00011 ATGTTTGGATTTAGAAGAGCAGCACCAGCACCAGCTCCAGCACCGAATCCTGCTTCCAGTTCCGATACTGAACAGGAAAAGAAGACGAACCTTACTACAGATAAAAGAACTTCTTCAGAACCTGCCATTGCACCAAAATCCAAAGGAAGCTATTTTGACGATGAAGATGACGACGATTATTGGGGGACAAAGCCTACTAAAACCGCGGCGTCACGCACTTCGGCCGCTAACAAAGCAAAGTATAAAAATGATTTTAAGGATTCCGGAGGCCTAGAGAACCAAAGTGTTCAGGAATTAGAGGGCTATGCTGTGTACAAAGCTGAAGAAACCACCGACAGTGTTAATAATTTGGTGAAGATTGCCGAGGACATAAGGGGTGATGCCACAAGGACCCTTGATATGTTGCACCAACAGGGTGAACAGATAACAAGAACTCACAACATGGTTGTTGAAACTGAAAGGGACTTGAGTCGGGGTGAAAAACTACTGAACAATCTTGGGGGCATGTTCTCTAAACCATGGAGGCCAAAGAAGACAAAGGAGATTACAGGCCCTAAAATCTCACTAGACAATACAATTAAAAAGGGTGAAGTGAATAAGCAAGATAGGGAGAAGTTGGGGTTAGGTGCTAAGGGACGTTCTGGTTCTAACACACCCCATTCTGAACCAAACAATGCCTACCAACAAATAGAAAATGAGAAAGCAAAACAAGACGAAGGACTATCAGATCTCAGTAATATTTTAGACGATTTGAAGGGTATGGCAGTTGATATGGGAAGCGAACTTGACAGGCAAAATAAAGCTCTTGATCATCTTAGTGATGATGTGGATGAGTTGAACTCTCGAGTTAAAGGTGCCAACCAACGTGCACGCAAATTATTAGACAAGTGA 891 0.4299 MFGFRRAAPAPAPAPNPASSSDTEQEKKTNLTTDKRTSSEPAIAPKSKGSYFDDEDDDDYWGTKPTKTAASRTSAANKAKYKNDFKDSGGLENQSVQELEGYAVYKAEETTDSVNNLVKIAEDIRGDATRTLDMLHQQGEQITRTHNMVVETERDLSRGEKLLNNLGGMFSKPWRPKKTKEITGPKISLDNTIKKGEVNKQDREKLGLGAKGRSGSNTPHSEPNNAYQQIENEKAKQDEGLSDLSNILDDLKGMAVDMGSELDRQNKALDHLSDDVDELNSRVKGANQRARKLLDK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90707g00011 296 MobiDBLite consensus disorder prediction 167 228 - -
Stsc90707g00011 296 MobiDBLite consensus disorder prediction 214 228 - -
Stsc90707g00011 296 SUPERFAMILY SNARE fusion complex 226 294 - -
Stsc90707g00011 296 SUPERFAMILY SNARE fusion complex 94 165 - -
Stsc90707g00011 296 Coils Coil 262 296 - -
Stsc90707g00011 296 Gene3D - 215 295 - -
Stsc90707g00011 296 MobiDBLite consensus disorder prediction 193 209 - -
Stsc90707g00011 296 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 55 295 - -
Stsc90707g00011 296 FunFam SNAP25 homologous protein SNAP33 90 167 - -
Stsc90707g00011 296 CDD SNARE_SNAP25N_23N_29N_SEC9N 102 165 IPR044766 GO:0005484|GO:0031201
Stsc90707g00011 296 FunFam SNAP25 homologous protein SNAP33 228 295 - -
Stsc90707g00011 296 SMART tSNARE_6 226 293 IPR000727 -
Stsc90707g00011 296 SMART tSNARE_6 97 166 IPR000727 -
Stsc90707g00011 296 CDD SNARE_Qc 234 292 - -
Stsc90707g00011 296 MobiDBLite consensus disorder prediction 1 92 - -
Stsc90707g00011 296 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 231 293 IPR000727 -
Stsc90707g00011 296 Gene3D - 90 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90707g00011 Stsc-Chr90707 102255 106562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90707g00011 222 291 SNARE and Associated Proteins AT3G09740 41.429 3.56e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90707g00011 K18211 - gmx:100806781 380.178